Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01790 ATGTCCTTCTTTTCCTCTTCAAAGCCCGATTCAAACCTCGCCACCGCCAAGGCGGTCCTCTCCACGGCGGCATCGGTGGCCGCCACTGCAATGGTCATCCGTTCGGTAGCCAGCGAGATCCTCCCGCCGGAGTTCATGTCGTACGTCAGAGATGGCCTCCGCAGCGCGCTGTCGCGGTTCTCATCGGAGACAACTATGGTGATCGAGGAGTTCGATGGTCTCGTGAGCAACCAAATCTACGAGGCGGCGGAGACCTACCTCGGCTCCAAAATCTCCCCCTTCACGCAGAGACTCAAGGTGACCAAACCCGAAACCGAAGACACCTTCATCCTCACAATGGAGCGCAACGAGTGCCTCAACGACGTGTTTAACGGTGTCAAGTTTAACTGGGTCCTGGTGTGCCGTCAAGTGGAGACACAACTCTTCCACAACCCGCGCCACATGAACTCCACTTTGAAATCGGAGGTTCGGTCCTTGGAACTGAGCTTCCACAAGAAGCACAAAGACATGGTCCTCAACACCTACCTTCCCTTCATTCTGAGGGAGGCCAAGTCCTTGAAGCAGGAGACGAAGGCCTTGAGGATCTTCACCGTCGATTATCACTGCATGTACGGAAACCCCAACGACGCCTGGACTGGGATCAATCTGGACCACCCCGCGACTTTTGACACGCTGGCTATGGAGCGTGACGTGAAGGATTTTGTGGTGAGGGATTTGGAGACGTTTGTGGCGAGGAAGGAGCATTATAGAAAAGTTGGGAAGGCATGGAAAAGAGGGTACTTGCTCTATGGACCTCCCGGTACAGGAAAATCCAGTTTGATTGCTGCTATGGCTAATTACCTGCGCTTTGATGTCTATGACTTGGAGCTCACCCAGTTGCAGAGCAATTCCGATCTCAGGAGATTGCTCATTGCCATGGCTAATAGGTCCATTCTCGTTGTTGAGGACATTGATTGCACTATTGAGTTTCACGAGCGCAGAGCGGAGGTCACACCCTTTCGCTCTGCAAATAATAACGACAGACAGGTTACACTGTCGGGGTTGCTGAATTTCGTTGACGGGTTATGGTCAAGTTGTGGGGACGAGAGGATAATAGTTTTCACAACAAACCACAAGGAGAAGCTTGACTCTGCGTTGCTCCGCCCTGGTCGCATGGATGTTCATATTCACATGTCCTTTTGCACTCCCTGTGGTTTTAGGCAGCTATCTTCCAATTACCTCGGACTAAAAGAACATGATCTCTTCCCACAGATCGAGGAAGAAATTCAGAAAACCCAGGTGACTCCAGCTGAAGTGGCAGAACAGCTTCTGAAGAGCAACGACACTGAAACTTGTCTTAAACAGCTTATAGATTTCCTAAGAGAAAAGAAAGAAACACAGGAACTGGAGGCTAAAAGGAAGGAACAGGAGGCCAAAGATAAAGAGGAACAGCAGAAGAAGGAGCTCGATGATGGTGATAAAGGAGAGGGGGTTGATAATGACGAAAAGAAAAGTACAACCGACTTAAACAACACTTGCTGA 1521 0.5036 MSFFSSSKPDSNLATAKAVLSTAASVAATAMVIRSVASEILPPEFMSYVRDGLRSALSRFSSETTMVIEEFDGLVSNQIYEAAETYLGSKISPFTQRLKVTKPETEDTFILTMERNECLNDVFNGVKFNWVLVCRQVETQLFHNPRHMNSTLKSEVRSLELSFHKKHKDMVLNTYLPFILREAKSLKQETKALRIFTVDYHCMYGNPNDAWTGINLDHPATFDTLAMERDVKDFVVRDLETFVARKEHYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDVYDLELTQLQSNSDLRRLLIAMANRSILVVEDIDCTIEFHERRAEVTPFRSANNNDRQVTLSGLLNFVDGLWSSCGDERIIVFTTNHKEKLDSALLRPGRMDVHIHMSFCTPCGFRQLSSNYLGLKEHDLFPQIEEEIQKTQVTPAEVAEQLLKSNDTETCLKQLIDFLREKKETQELEAKRKEQEAKDKEEQQKKELDDGDKGEGVDNDEKKSTTDLNNTC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01790 506 CDD RecA-like_BCS1 235 391 - -
Vian1g01790 506 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Vian1g01790 506 Gene3D - 390 460 - -
Vian1g01790 506 PANTHER BCS1 AAA-TYPE ATPASE 21 461 - -
Vian1g01790 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 453 IPR027417 -
Vian1g01790 506 Coils Coil 450 485 - -
Vian1g01790 506 SMART AAA_5 256 395 IPR003593 GO:0016887
Vian1g01790 506 Pfam ATPase family associated with various cellular activities (AAA) 261 391 IPR003959 GO:0005524|GO:0016887
Vian1g01790 506 Gene3D - 212 389 IPR027417 -
Vian1g01790 506 MobiDBLite consensus disorder prediction 461 506 - -
Vian1g01790 506 Pfam Domain associated at C-terminal with AAA 41 134 IPR025753 -
Vian1g01790 506 MobiDBLite consensus disorder prediction 461 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01790 Vian-Chr1 21090805 21093059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01790 248 385 Miscellaneous Gene Families AT3G02450 35.374 2.31e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01790 - K08900 gmx:100788420 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01790 1 21090805 21093059 Vian1g01790 1 21090805 21093059 ECH