LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g01784	ATGGAGAAGCTGGCTTCTTCAACTGCAACTGTTCCCACGCAACACTTCCTCTTTCAACTTCAACACTCTCTCTTTCCCGTTTGCACCTTCGCTACCTCTCACCGGAACCGCACCGAATCCCTCTCCCACCTCTCTTCCAGAACCAGACACCGTCGCTTCCAATCATTCCACTCCAAACAAGACCAGCTCTGGGTCGGCGAAGAAGAATTGCAACTACAATTAAAGGAAGCAGTAGAAGACGAAGGAGATTCGTATTTGGACGATGATGACTCGTCTTTCTTGTCCCTCAGCGACAAGCCCGACCGGAACATGGCCTTGCTCGACGATTACGAGACCGAGGAGCTCGACTTCGATACCGGTCCCGACCATCGGAGCGGATATGTGGCGTTACTTGGGAAGCCAAATGTTGGAAAGAGTACACTGGCGAACCAAATGCTTGGCCAAAAGTTGTCAATAGTTACTGATAAACCTCAAACAACCCGGCATCGAATTCTGTGTATATGTTCTGGCACGGATTACCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCAGCAGTTAATGCTGACTGTGTGTTGGTTCTTGTGGACGCACGTAAAGCTCCCGAAAAAATTGATGGATTGTTGGAAGAAGGAGTAGGAGACCTCAAAGATAAACCACCCACTCTATTGATTATAAACAAGAAGGACCTTGTTAAACCTGGGGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGATGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTAAAGGACTGGATACTGTCAAAGATTCCCAATGGACCAGCTTATTATCCAAAGGCATGTCAAAATGAGCATCCAGAAAGATTTTTTGTGGCTGAAATTGTTAGAGAAAAGATTTTTATACAGTATCGAAATGAAATTCCATACGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGATTACATACAAGTAGAGATTTTGGTTGAGAAAAATTCACAGAAGATTATCATTATTGGAAAAGAAGGAAAGGCTTTGAAACTGCTTGCAATGGCTGCTCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTAAAGGTTAGAGAAAATTGGCGACAAGATGAAGGGCTTCTAAAGCACTATGGTTATGGGGGTCAGATACGTGTTATATAA	1272	0.4277	MEKLASSTATVPTQHFLFQLQHSLFPVCTFATSHRNRTESLSHLSSRTRHRRFQSFHSKQDQLWVGEEELQLQLKEAVEDEGDSYLDDDDSSFLSLSDKPDRNMALLDDYETEELDFDTGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHMLDSMMMKNVRSAAVNADCVLVLVDARKAPEKIDGLLEEGVGDLKDKPPTLLIINKKDLVKPGELAKKLEWYEKFTDVDEVIPVSAKYGQGVEDVKDWILSKIPNGPAYYPKACQNEHPERFFVAEIVREKIFIQYRNEIPYACQVNVVNYKARPNAKDYIQVEILVEKNSQKIIIIGKEGKALKLLAMAARLDVEDFLQKKVYLEIEVKVRENWRQDEGLLKHYGYGGQIRVI	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g01784	423	PANTHER	GTPASE ERA	78	408	IPR005662	GO:0003723\|GO:0005525
	Vian1g01784	423	Pfam	50S ribosome-binding GTPase	128	245	IPR006073	GO:0005525
	Vian1g01784	423	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	325	IPR027417	-
	Vian1g01784	423	NCBIfam	GTPase Era	126	399	IPR005662	GO:0003723\|GO:0005525
	Vian1g01784	423	ProSiteProfiles	Era-type guanine nucleotide-binding (G) domain profile.	124	294	IPR030388	GO:0005525
	Vian1g01784	423	NCBIfam	small GTP-binding protein domain	128	287	IPR005225	GO:0005525
	Vian1g01784	423	FunFam	GTPase Era	305	419	-	-
	Vian1g01784	423	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	305	416	IPR009019	GO:0003723
	Vian1g01784	423	Pfam	KH domain	328	405	IPR004044	GO:0003723
	Vian1g01784	423	Gene3D	-	305	420	IPR015946	-
	Vian1g01784	423	FunFam	GTPase Era	121	303	-	-
	Vian1g01784	423	CDD	KH-II_Era	314	400	-	-
	Vian1g01784	423	Hamap	GTPase Era [era].	123	416	IPR005662	GO:0003723\|GO:0005525
	Vian1g01784	423	CDD	Era	123	291	IPR030388	GO:0005525
	Vian1g01784	423	ProSiteProfiles	Type-2 KH domain profile.	325	402	IPR004044	GO:0003723
	Vian1g01784	423	Gene3D	-	121	304	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g01784	Vian-Chr1	20979857	20984025	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g01784	K03595		-	gmx:100815820	697.197

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g01784	1	20979857	20984025	Vian1g01784	1	20979857	20984025	ECH