Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01780 ATGGCTTCTTCCATATGTGCTCTCTCTCCTTCCGTCCCATCACACCTCACTAAAACCACTCTCCCTCTTTTTCAAGGAAGCAAGTGCGAAATGAGCCGGAGGACTTTTGCGGTTAAGGGAATTGTGGCCTCCGGCGTTTCGGTCTCCTCTTCCACTCTCACCGCGGAAGCTCTGCCGTCTTCCAATGGTTTTGAAAGATTGCCGTACAAAGCAGAAGGGTACAATTATTGGACATGGAGGGGTCATAAAATACACTACGTTGTGCAAGGAGAAGGTTCCCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCGTTCCACTGGAGACGGGGATCGGAATCTACATGGAATGACCGAGTGAAAGTACACGGAGAAAATGAACCCAACCTTTTACAGTATGCGAACCGAGTGTGCCCATTTTTACAAGATTCTGATATCACTATTGCTCCTTCTTGTAAGCTAAGAAGCTTGAGTGGTTCTGTTCTGTCTTTGTGGTACAACATTCCAGAATTGGCTAAGAAACATAGGGTATATGCCATAGACTTGCTTGGATTTGGGTGGAGTGACAAAGCACTTATCGATTATGATGCCATGGTGTGGAGGGATCAAGTGGTGGACTTCGTGACGGAAATAGTAAAAGAACCAGCAGTTTTAGTTGGAAATAGCCTCGGAGGATTTACTGCTTTGGTTGCAGCAATTGGGTTGCCTGAGCTTGTAAATGGAGTTGCTCTACTAAATTCTGCTGGACAATTTGGTGATGAGAAAAGGGAAAGTAAAACTTCTGAAGAAACAGCTCTACAAAAGTTTGTCCTAAAGCCTTTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTTTGTTCTGGCAGGCAAAGCAACCAGCTCGCATTGTGTCAGTTCTAAAAAGTGTGTATATAAATTCTTCCAATGTGGATGACTATCTCGTGGAATCTATAACAAGGCCAGCTCAAGATCCAAATGCTGGAGAAGTTTATTACAGGTTAATGACACGGTTCATGATGAATCAGAGCAAGTACACTCTAAATGCTGTCTTAAGTGAACTATCTTGCCCGTTATTGTTGCTCTGGGGCGACCTTGACCCGTGGGTTGGTCCAGGAAAGGCTAATCGAATCAAAGAGTTCTATCCAAAAACGACTCTTGTAAACTTGCAGGCAGGGCATTGTCCACATGATGAGATACCAGAGCTTGTGAACAAGGCTTTATTGGATTGGTTGACAACCCTCACACCTGAAGTGACTCTCCAAACTGTTTGA 1272 0.4442 MASSICALSPSVPSHLTKTTLPLFQGSKCEMSRRTFAVKGIVASGVSVSSSTLTAEALPSSNGFERLPYKAEGYNYWTWRGHKIHYVVQGEGSPIVLIHGFGASAFHWRRGSESTWNDRVKVHGENEPNLLQYANRVCPFLQDSDITIAPSCKLRSLSGSVLSLWYNIPELAKKHRVYAIDLLGFGWSDKALIDYDAMVWRDQVVDFVTEIVKEPAVLVGNSLGGFTALVAAIGLPELVNGVALLNSAGQFGDEKRESKTSEETALQKFVLKPLKEVFQRVVLGFLFWQAKQPARIVSVLKSVYINSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSKYTLNAVLSELSCPLLLLWGDLDPWVGPGKANRIKEFYPKTTLVNLQAGHCPHDEIPELVNKALLDWLTTLTPEVTLQTV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01780 423 Pfam Alpha/beta hydrolase family 95 405 IPR000073 -
Vian1g01780 423 PRINTS Alpha/beta hydrolase fold signature 232 245 IPR000073 -
Vian1g01780 423 PRINTS Alpha/beta hydrolase fold signature 218 231 IPR000073 -
Vian1g01780 423 PRINTS Alpha/beta hydrolase fold signature 174 189 IPR000073 -
Vian1g01780 423 SUPERFAMILY alpha/beta-Hydrolases 74 110 IPR029058 -
Vian1g01780 423 Gene3D alpha/beta hydrolase 154 414 IPR029058 -
Vian1g01780 423 SUPERFAMILY alpha/beta-Hydrolases 158 411 IPR029058 -
Vian1g01780 423 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 25 110 - -
Vian1g01780 423 FunFam Alpha/beta fold hydrolase 148 414 - -
Vian1g01780 423 Gene3D alpha/beta hydrolase 70 114 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01780 Vian-Chr1 20904997 20908292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01780 94 401 Acyl Lipid Metabolism Gene Families AT3G10840 23.055 4.54e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01780 - - gmx:100776976 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01780 1 20904997 20908292 Vian1g01780 1 20904997 20908292 ECH