Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01770 ATGAGTTTCAGGGAAGAGACTGGAGATGCGAGGGATCTTCAGAAACCGTTTCTCCACACGGGGAGTTGGTACAAGATGGGTTCGCGGCAGTCCAGTATCATGGGATCCTCTACTCAGGTCATCCGTGACGGCGCTGTCTCCGTCCTCTTCTGCGTCCTCATCGTTGCCTTGGGTCCTATCCAATTCGGCTTCACATGTGGTTATTCTTCTCCAACGCAAGGGGCTATAGTACGCGATCTAAAGCTCTCGGTTTCGGAGTTCTCTCTGTTTGGATCTTTGTCGAATGTGGGAGCGATGGTGGGAGCTATAGCAAGTGGTCAGATAGCTGAATACATAGGCCGCAAAGGGTCGTTGATGATTGCTGCAATTCCCAATATAATAGGGTGGCTTGCTATTTCTTTTGCCAAAGATTCCTCGTTTTTGTTTATGGGGAGGTTGCTGGAAGGTTTTGGCGTTGGGATAATCTCTTATGTGGTTCCTGTATATATAGCTGAGATTTCCCCTGAAAACATGAGAGGTAGCCTTGGATCAGTGAACCAGCTCTCTGTTACAATTGGCATTCTACTGGCTTATTTGTTGGGCCTTTTTGTCAACTGGAGAGTGCTTGCTATTTTAGGAATTTTGCCTTGTACAGTATTAATACCAGGGTTATTTTTCATACCGGAATCCCCCAGATGGTTGGCCAAGATGGGGATGACGGATGAGTTTGAGACTTCTTTGCAAGTGTTAAGAGGATTTGACACTGACATATCTGTTGAAGTTTATGAAATTAAGAGATCTGTGGCTTCAACAGGAAAAAGAGCTGCAATCCGATTTGCAGACCTAAAGAGGAAAAGATATTGGTTCCCCTTAATGGTTGGTATTGGATTACTTGTTCTTCAGCAATTATCTGGCATCAATGGAGTTTTGTTCTATGCAACCACCATCTTTGCAAACGCAGGAATTTCATCAAGCGATGCTGCTACAGTTGGACTTGGAGCCATTCAGGTCATAGCAACTGGAATTTCAACGTGGCTGGTGGACAAAAGTGGTCGGAGGCTGCTTTTAATGATATCTTCATGTCTAATGACAATTAGCCTTGTCATTGTTTCAGCAGCATTCTATCTAGAGGTTGATAATAGTACTGAGGATTCACATCTATTCAGCATTTTGGGAATACTTTCTGTTGTTGGACTTGTGGTTATGGTGATTGGGTTCTCTCTAGGCCTTGGACCCATCCCTTGGCTGATAATGTCTGAGATACTTCCTGTGAATATAAAGGGACTTGCTGGCAGTATAGCGACAATGGGAAACTGGCTGATTGCGTGGGTGATCACGATGACAGCTAACTTACTTTTAAATTGGAGCAGTGGAGGGACATTCACAATCTACGCAGTAGTAGCTGCCATAACAATTGCTTTTATAGCGAAATTTGTCCCTGAGACCAAGGGAAGAACATTGGAAGAAATTCAGTTTTCCTTCAGATAG 1467 0.441 MSFREETGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGFTCGYSSPTQGAIVRDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEISPENMRGSLGSVNQLSVTIGILLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSLQVLRGFDTDISVEVYEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGVLFYATTIFANAGISSSDAATVGLGAIQVIATGISTWLVDKSGRRLLLMISSCLMTISLVIVSAAFYLEVDNSTEDSHLFSILGILSVVGLVVMVIGFSLGLGPIPWLIMSEILPVNIKGLAGSIATMGNWLIAWVITMTANLLLNWSSGGTFTIYAVVAAITIAFIAKFVPETKGRTLEEIQFSFR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01770 488 CDD MFS_GLUT6_8_Class3_like 49 482 IPR044775 GO:0008643|GO:0051119
Vian1g01770 488 ProSitePatterns Sugar transport proteins signature 1. 105 122 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 FunFam sugar transporter ERD6-like 6 42 487 - -
Vian1g01770 488 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 476 IPR020846 GO:0022857
Vian1g01770 488 SUPERFAMILY MFS general substrate transporter 52 484 IPR036259 -
Vian1g01770 488 ProSitePatterns Sugar transport proteins signature 2. 147 172 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 PANTHER - 42 484 - -
Vian1g01770 488 NCBIfam sugar porter family MFS transporter 44 483 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 Pfam Sugar (and other) transporter 52 484 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 Gene3D MFS general substrate transporter like domains 43 488 IPR036259 -
Vian1g01770 488 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 PRINTS Sugar transporter signature 142 161 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 PRINTS Sugar transporter signature 59 69 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian1g01770 488 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01770 Vian-Chr1 20795122 20800017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01770 1 488 Organic Solute Cotransporters AT1G75220 79.141 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01770 K03444 - gmx:100813399 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01770 1 20795122 20800017 Vian1g01770 1 20795122 20800017 ECH