Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01764 ATGATCAAAGCAGTGCTGGTGATGAACACGCAGGGGAAGCCTCGTCTCACCAAATTCTACGAATTTCAGCCCGTGGAGCAGCAGCAGGAAGCCATTCGCAATGTGTTTTCAGTATTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGTCCGTCTTTGGCCCGGACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCGTGTTCATTTTTGATAGTTCTGAAAATGAACTTGCTATGCTTGATTTGATACAAGTCTTTGTTGAAACATTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGTTGCATACTATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAACTGAGGTGATGAAAGCTATTGAAGAAATAGCAAGACTTGAAGCAGCATCCAGTGCAATCAATCTTGTTCCAAAATCTGTTTCTGGTTGGAGGTCCCGGTAA 501 0.4251 MIKAVLVMNTQGKPRLTKFYEFQPVEQQQEAIRNVFSVLCSRPEHVSNFVDAESVFGPDSRLVYKHFATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDIVFNYSKLHTILDEIILGGQVLETSSTEVMKAIEEIARLEAASSAINLVPKSVSGWRSR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01764 166 Coils Coil 129 149 - -
Vian1g01764 166 Pfam Clathrin adaptor complex small chain 1 145 IPR022775 -
Vian1g01764 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vian1g01764 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 147 IPR016635 GO:0015031
Vian1g01764 166 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Vian1g01764 166 FunFam AP complex subunit sigma 1 156 - -
Vian1g01764 166 PIRSF AP_complex_sigma 1 155 IPR016635 GO:0015031
Vian1g01764 166 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
Vian1g01764 166 Gene3D - 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01764 Vian-Chr1 20726502 20731884 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01764 K12399 - gmx:100306517 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01764 1 20726502 20731884 Vian1g01764 1 20726502 20731884 ECH