Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01762 ATGTTCCTTCTTAGAAGGCAAGGCCAAAATCAGCTGGAGAATGATTCCTCAAAACAAGATACAAAGGTGAATGAACTCAGGGCTGCTGTTGGGCCCCTCTCTGGTCGTCGACTACTGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAATTGGAATGTTGATAAAGCAAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAAGAAATTCGTTGGGCTGAAGTAGCACATGAGGGTGAGACAGGTAAAGTATCCAGAGCTAACTTTCGTGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGAATGCAGAACACAACATCAGCTGAAGATAATATCAGGCATTTAGTCTATCTATTGGAAAATGCTATCCTAAATCTTCAAGAAGGTCAAGAACAAATGTCGTGGTTGATAGACTTCACAGGATTATCATTGAATACAAATATTTCTGTTAAAACAGCTCGTGATATTATTCACATTTTACAAAATCACTATCCAGAAAGGCTTGCTATTGCTTTCCTGTACAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCCGTGAGGTTTTTCCTGGATCCGAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAATAATAAGGACAGTGTGGAACTAATGCAATCACTCTTCGACCTAGATAACCTTCCAAGTGAATTTGGAGGGAAAACAAGTTTAATGTATGACCATGAAGAGTTCTCACGGTTGATGACTGAGGATGATGTGAAAACTGCTAAGTTCTGGGGAATTGACCAGAAGCCTTTCAACCCTCCTAAGAAAGGGCATGCTGGAGCAGAGGTGGCACCAGAACCCGTGTCTGTTCAGACAGTAGGTAGTTAG 891 0.4186 MFLLRRQGQNQLENDSSKQDTKVNELRAAVGPLSGRRLLYCTDACLRRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWAEVAHEGETGKVSRANFRDRLGRTVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLQEGQEQMSWLIDFTGLSLNTNISVKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVRFFLDPKTVQKVKFVYPNNKDSVELMQSLFDLDNLPSEFGGKTSLMYDHEEFSRLMTEDDVKTAKFWGIDQKPFNPPKKGHAGAEVAPEPVSVQTVGS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01762 296 SUPERFAMILY CRAL/TRIO N-terminal domain 9 82 IPR036273 -
Vian1g01762 296 SMART sec14_4 87 242 IPR001251 -
Vian1g01762 296 SUPERFAMILY CRAL/TRIO domain 82 258 IPR036865 -
Vian1g01762 296 PANTHER GH16843P 9 270 - -
Vian1g01762 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vian1g01762 296 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Vian1g01762 296 MobiDBLite consensus disorder prediction 270 296 - -
Vian1g01762 296 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g01762 296 CDD SEC14 99 240 IPR001251 -
Vian1g01762 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vian1g01762 296 Pfam CRAL/TRIO domain 99 239 IPR001251 -
Vian1g01762 296 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Vian1g01762 296 Gene3D - 4 268 IPR036865 -
Vian1g01762 296 PRINTS Cellular retinaldehyde-binding protein signature 90 114 - -
Vian1g01762 296 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Vian1g01762 296 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Vian1g01762 296 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01762 Vian-Chr1 20713975 20716957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01762 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.536 5.15e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01762 K26544 - gmx:100800024 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01762 1 20713975 20716957 Vian1g01762 1 20713975 20716957 ECH