Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01740 ATGGCTACGGATACAATTTTCAACCCTTCTAAGTGGTTCTCCTACAAAACTCTTAAGTTAAGCCTTCGTCGTCCAAGATCAAGATCCTCCAACTCACCATCACAATCGTCAACTGCTTCTCCACGATCTCCCATGTCAACATGCACAACCCCAAAGAAGGAAGACATCAACGGCCTGGTGGAAGCATTTCGTCACTTTGATGGTGATGGAGATGGGAAAATCTCGGCCTACGAGCTTAGGTCGTATTTTGGGTCCATTGGGGAGCACGTGTCTCACGAGGATGTCGAAGGGGTGATCCATGACCTGGATTCCGATGGGGATAACATGTTGGACTTGCAGGATTTCACGAAGCTGATGAAGAGAGATGGTGATGAGGGGGATCTGAGAAAGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGCGGTTGCATCACCCCGAAGGGGTTGCAGAGGATGTTGCACCGTCTTGGAGATGACAGGTCCTATGATGAGTGTGTTGCCATGATTGGTGCCTTTGACATTGATCACAACGGTGTTCTTGATTTCGATGAGTTTTACCAAATGATGGCTTAG 576 0.4792 MATDTIFNPSKWFSYKTLKLSLRRPRSRSSNSPSQSSTASPRSPMSTCTTPKKEDINGLVEAFRHFDGDGDGKISAYELRSYFGSIGEHVSHEDVEGVIHDLDSDGDNMLDLQDFTKLMKRDGDEGDLRKAFEMFVWEKEGCGCITPKGLQRMLHRLGDDRSYDECVAMIGAFDIDHNGVLDFDEFYQMMA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01740 191 MobiDBLite consensus disorder prediction 21 52 - -
Vian1g01740 191 Pfam EF-hand domain pair 143 190 IPR002048 GO:0005509
Vian1g01740 191 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Vian1g01740 191 CDD EFh 127 191 IPR002048 GO:0005509
Vian1g01740 191 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Vian1g01740 191 Gene3D - 43 123 - -
Vian1g01740 191 Gene3D - 124 191 - -
Vian1g01740 191 ProSiteProfiles EF-hand calcium-binding domain profile. 161 191 IPR002048 GO:0005509
Vian1g01740 191 MobiDBLite consensus disorder prediction 24 52 - -
Vian1g01740 191 Pfam EF-hand domain pair 60 120 IPR002048 GO:0005509
Vian1g01740 191 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Vian1g01740 191 FunFam Calmodulin A 43 122 - -
Vian1g01740 191 SUPERFAMILY EF-hand 42 190 IPR011992 -
Vian1g01740 191 CDD EFh 59 120 IPR002048 GO:0005509
Vian1g01740 191 PANTHER CALCIUM BINDING PROTEIN 110 190 - -
Vian1g01740 191 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Vian1g01740 191 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Vian1g01740 191 SMART efh_1 165 191 IPR002048 GO:0005509
Vian1g01740 191 SMART efh_1 94 122 IPR002048 GO:0005509
Vian1g01740 191 SMART efh_1 58 86 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01740 Vian-Chr1 20280323 20280898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01740 8 191 EF-hand Containing Proteins AT3G50770 52.551 7.59e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01740 K13448 - gmx:100306370 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01740 1 20280323 20280898 Vian1g01740 1 20280323 20280898 ECH