Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g01519 | ATGGCTCCGATGCTTGAGAGTGAAAAAGACCCTCCAAAACGACCTTCACGTGCCTTTCTGGACACAGTTGAAGAAATCACCGCAATTTATAGGTCACTGCCACCTCGACCTTCCATTGAAGAGGTGGAAGCTGCCACGTCCACTGTGGATACCCTCAACAACGAGGAACAAACCAAACTCCACCAAATCTCAATGCAAAAGCCTCCTCGCGATGTCCCCGAGGACCTCTTCTCTGTCCTGCAGCAACTCAAGAAGACCATGCTCCTTTTCCATACCCAACAACACAGGAGAGAGGCTCTTCAACTTCTTGAGCTCGAAAACATGTTTCAAACATTCGGTCATCTCATTCAGAGGGCTTCTGAATTGGTCTCTGGAGATATCCACAAGAGAAGTCTTCCCTCTATACCTGAAGAACTCGTAGTGATCACTGACCAAACTGAAACTTTGGTGAAGGAAGACGAAGAATCACAGAAGAATGATTTCCAAATGATACAGCTGTCCTTCTCTACAGGGAATGGAAGCACTGAGAAATTAAGTCTAATGAAAGTTGCTACTCTTATTGAAAGTTGTGCTGGTACTGGAGCTACAACCCTTGAACTTAGAGGGAAGTTGGAGGATCAGATGGAGTGGTTGCCGGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCAGAAAACAGAATCATGGCTCTTCCTACAACCATTGTGGGACTCAAGGCTTTAACAAAGCTTGATCTTCACTCAAACCAACTTATAAACCTTCCCCATTCATTTGGGGAATTGATAAACCTTGTTGATCTTGACCTCCACGCCAACAGATTGAAATCACTTCCTGCTACTTTTGGAAACTTGACAAACCTCATTGATCTAGACTTGAGCTCAAATGGGTTCACAAATTTACCAGAGACAATTGGGAATTTGAGCAGCTTGAAGATATTGAATGCTGAGACCAACGAGCTTGAGGAACTGCCTCACACAATTGGAAATTGCTCATCACTATCTGAGCTCAAGTTGGATTTCAATCAGCTAAAGGCCTTACCTGAGGCAATTGGGAAGCTTGAAGGGTTGGAGATTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCCACAGTGGGCAATCTATGCAATTTGAATGAACTTGATGTTAGCTTTAATGAGCTCGAATTTATACCAGAGAATCTGTGTTTTGCAACTAATTTGAAGAAATTAAACTTGGGGAAGAACTTTGCGGACTTAAGAGCCTTGCCAACATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAATCTTTACCAGAGTCTTTCAGGTTCTTGTCCAAGTTGAGAGTTTTTCGAGCTGATGAGACCCCCCTTGAGGTGCCACCCAGAGAATTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCACTATATGGCTGATTTTGTCACCAAAAGGGACGCAAAAATCGTGCCATTAAAGAAGAAAAAGAAGGGGTTCTGGTCCTGGTTTTGCTCCATATTTTGTTCTAAGCTTGAATGA | 1551 | 0.4288 | MAPMLESEKDPPKRPSRAFLDTVEEITAIYRSLPPRPSIEEVEAATSTVDTLNNEEQTKLHQISMQKPPRDVPEDLFSVLQQLKKTMLLFHTQQHRREALQLLELENMFQTFGHLIQRASELVSGDIHKRSLPSIPEELVVITDQTETLVKEDEESQKNDFQMIQLSFSTGNGSTEKLSLMKVATLIESCAGTGATTLELRGKLEDQMEWLPVSIGKLSDVTEMDLSENRIMALPTTIVGLKALTKLDLHSNQLINLPHSFGELINLVDLDLHANRLKSLPATFGNLTNLIDLDLSSNGFTNLPETIGNLSSLKILNAETNELEELPHTIGNCSSLSELKLDFNQLKALPEAIGKLEGLEILTLHYNRVKRLPSTVGNLCNLNELDVSFNELEFIPENLCFATNLKKLNLGKNFADLRALPTSIGNLEMLEELDISDDQIKSLPESFRFLSKLRVFRADETPLEVPPRELVKLGAQEVVHYMADFVTKRDAKIVPLKKKKKGFWSWFCSIFCSKLE | 516 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g01519 | 516 | PANTHER | - | 417 | 474 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 310 | 329 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 333 | 352 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 241 | 260 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 427 | 446 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 379 | 398 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 287 | 306 | - | - | |
| Vian1g01519 | 516 | SMART | LRR_bac_2 | 356 | 375 | - | - | |
| Vian1g01519 | 516 | Gene3D | Ribonuclease Inhibitor | 47 | 287 | IPR032675 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 287 | 309 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 334 | 355 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 379 | 402 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 264 | 286 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 356 | 378 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 310 | 333 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 218 | 240 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 241 | 263 | IPR003591 | - | |
| Vian1g01519 | 516 | SMART | LRR_typ_2 | 427 | 449 | IPR003591 | - | |
| Vian1g01519 | 516 | FunFam | Plant intracellular Ras-group-related LRR protein 4 | 177 | 485 | - | - | |
| Vian1g01519 | 516 | SUPERFAMILY | L domain-like | 188 | 464 | - | - | |
| Vian1g01519 | 516 | Pfam | Leucine rich repeat | 266 | 323 | IPR001611 | GO:0005515 | |
| Vian1g01519 | 516 | Gene3D | Ribonuclease Inhibitor | 288 | 368 | IPR032675 | - | |
| Vian1g01519 | 516 | Gene3D | Ribonuclease Inhibitor | 369 | 485 | IPR032675 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g01519 | Vian-Chr1 | 16861410 | 16863492 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g01519 | 214 | 441 | Receptor kinase-like Gene Family | AT3G11080 | 33.898 | 1.43e-23 | 103 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g01519 | - | - | gmx:100798442 | 856.284 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian1g01519 | 1 | 16861410 | 16863492 | Vian1g01519 | 1 | 16861410 | 16863492 | ECH |