LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g01487	ATGGACGGTCTGATAAAGGACTTGGTCGATCTTGCTATCGGTGGTGCCGATCACAACGATCGCCAAGAAGAACACGGTGAACGCTCCTGGGCCGACCTTGTCTCCGGCGATCAGGATCAGGATCAGCCTCGTCCTCATCGGCAGCAGCAGCAGCAACAACAGACACAGTGGTCCAACTCACCCGAAAAGGAAGAACGGTGGGAAGAAGATAGTCACAGTTATACCAACAGGCCCCATCAGGCAGTATATCGTCCTCAGCATGAGGAGAGCCAATCTCAAAATTTCAACACTGGCCACAAGGTGAAAGAAGATCAAGATGAATGGCAGACAGTTGGCAAACCTTCAAGGAGACCACAAAAGGTTAGTGAAGATCAAGATGGATGGCAGACTGTTGGCAAACCTCCAAGGCGGACACAAAAGGTTCCGAAGGAAACTTGGCAGAACTACAAACGGCCTTCTGAGGAGCAAGAATACTCTAATGAGGTTGAAATCGGTGCTAGTTTGAATCCCTCAGAAGATGAACTTGCTGATCTATCAAAAGCTTGTGACAAACTCTGGGATCTTGATTTAAATCGGTTGGTACCTGGCAAAGACTATGAAATTGACTGTGGTGAAGGGAAAAAGGTTTTCCAAAACGAAGATATGGCAGAGGGGAGCTTGTTTACTTGGGTTAGTGATGATGTATTCAGAAGGCCTACATTTGCTCGTTTTCTCTCACTGCTAGATAATTACAATCCACATGAAGGATGTAAGGAAGTTGTCACATACGAAGAGAGACAAGAGCAAGCTTCTTTCATAGAAGAAATCAGTAGAACAGCACCAATTAAATATCTTCACAATTATCTTACATCTAAGGGAATTGCATCAGGGAGTTACCAAGATTTCAAACGAATGATAACCAATCTATGGTTTGACCTTTATGGCCGTGGTGGCACTTCTGGCTCCTCTTCTTCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAAAGTGGCGAAGTTTCTGGCTTCCATAACTGGCTGCAGTTTTACCTTGAAGAAGAAAAGGGGAGAGTTGATTATCAGGGCTATATTTTCCCCCGTCGACGGGGAGAAACTCCTGATTCGGAAACGCAGCTTCTAACTGTTCAGTTTGAATGGAATGGTGTTCTGAAATCTTTATCAAGCACTTTGGTTGGAGTGAGCCCTGAATTTGAAATTGCTTTATATACCCTGTGTTTCTATGTTGGTAGGGAGGATAACCACATTCAACTCGGTCCATATCCAGTTAATATCAAGTGCTATCGTTTTGGCAATAAGATTGGATCTGTTTTCCCCATTGCAGAGTCTTGA	1329	0.4402	MDGLIKDLVDLAIGGADHNDRQEEHGERSWADLVSGDQDQDQPRPHRQQQQQQQTQWSNSPEKEERWEEDSHSYTNRPHQAVYRPQHEESQSQNFNTGHKVKEDQDEWQTVGKPSRRPQKVSEDQDGWQTVGKPPRRTQKVPKETWQNYKRPSEEQEYSNEVEIGASLNPSEDELADLSKACDKLWDLDLNRLVPGKDYEIDCGEGKKVFQNEDMAEGSLFTWVSDDVFRRPTFARFLSLLDNYNPHEGCKEVVTYEERQEQASFIEEISRTAPIKYLHNYLTSKGIASGSYQDFKRMITNLWFDLYGRGGTSGSSSSFEHVFVGEIKQSGEVSGFHNWLQFYLEEEKGRVDYQGYIFPRRRGETPDSETQLLTVQFEWNGVLKSLSSTLVGVSPEFEIALYTLCFYVGREDNHIQLGPYPVNIKCYRFGNKIGSVFPIAES	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	45	60	-	-
	Vian1g01487	442	Pfam	Endoribonuclease XendoU	177	438	IPR018998	GO:0004521
	Vian1g01487	442	CDD	XendoU	174	438	IPR018998	GO:0004521
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	61	75	-	-
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	13	44	-	-
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	76	98	-	-
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	99	123	-	-
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	13	158	-	-
	Vian1g01487	442	ProSiteProfiles	Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile.	174	442	IPR018998	GO:0004521
	Vian1g01487	442	SUPERFAMILY	EndoU-like	176	440	IPR037227	-
	Vian1g01487	442	PANTHER	PLACENTAL PROTEIN 11-RELATED	45	441	IPR039787	GO:0004521
	Vian1g01487	442	MobiDBLite	consensus disorder prediction	137	158	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g01487	K14648		-	gmx:100813919	590.882

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g01487	1	16435477	16438905	Vian1g01487	1	16435477	16438905	ECH