Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01486 ATGGCTCTAACACTTCGTTCTTCAATTTCTTTTATTAATCAGAAAGAAACCAAAATCCTTAAAACTTCTGATGATGTCCCTGCGATAGTTAGTTTTGCAAAGGTTAAGCCATCGTTCCGTCTCCGAGTGAAAAATTCCATGCAAGAAGCACGCCCCGCACGCGACAACAGCTTCAATTCTGAAGCAAGGAGAAACGAAAAATGGGAGAAGGTGCATGCTCCTTCGGTGGCTCACAGTCACAGTGATTCGAAGAGGGTACCTGTGTACGTGATGCTGCCATTAGACACTGTAACAATGGGAGGAAGCTTGAACAAGCCTAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTCGAAGGCGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAGGACGGGCCTTTGAAGTACAATTGGGAACCCTATGTTGAGCTTGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTAGTTATGTCTTTCCATCACGTTCCTCTACCACCATGGGTGCAGGAAGAAATCAGCAAAAACCCTGACCTTGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCATTGGGGTGTGATTCAGTTCCTATTCTAAGAGGAAGGACTCCCCTACAAGTCTACGCAGACTACATGAGAAGCTTTCGTGACAGATTCGGAGATTACTTAGGCAGTGTTATCGTGGAAATACAAGTTGGCATGGGTCCATGTGGAGAACTGAGATATCCATCTTATCCAGAAGCAAATGGAACTTGGAGATTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAGAAGGGAAGGGACATGGAATACTGAATATGGACGGTTCTTTTTAGAATGGTACTCTGGTAAATTGCTAGAACATGGAGAGAAGATTCTCGTATCAGCCAAAGGAATATTCGATACATCAGGGGTGAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCACTACAGAGCAAGGTCACACGCAGCTGAACTAACTGCTGGCTACTATAACACGCGAAATAACGATGGGTATATGCCCATAGCCAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGTATGGAAATGAAAGACAGAGAGCAGCCTGACTTTGCCAACTGCTCACCTGAAGGGTTGGTTAGTCAGGTTAAAATGGCAACAAAAACAGCTAGAGCAGAACTTGCTGGAGAAAACGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAATCCGAATCCGGCAATGGATTGGCAGCATTCGCTTATCTAAGAATGAACAAGCGGTTGTTTGAAGGTGATAACTGGCGGCACCTGGTGGATTTTGTAAGAAGCATGTCTGAAGGCGGTAGGAGAGAGAGACTTCCGGCATCCGATTCCCATGGGAGTGATCTTTATGTTGGCCACATCAAATCAACACGGGAGAAACACACACAAGAGGCAGTTCTTGTGTAA 1617 0.4521 MALTLRSSISFINQKETKILKTSDDVPAIVSFAKVKPSFRLRVKNSMQEARPARDNSFNSEARRNEKWEKVHAPSVAHSHSDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYVELVQMVQMHGLKLQVVMSFHHVPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDSVPILRGRTPLQVYADYMRSFRDRFGDYLGSVIVEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRREGTWNTEYGRFFLEWYSGKLLEHGEKILVSAKGIFDTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYMPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVSQVKMATKTARAELAGENALERYDADAYAQVLSTSKSESGNGLAAFAYLRMNKRLFEGDNWRHLVDFVRSMSEGGRRERLPASDSHGSDLYVGHIKSTREKHTQEAVLV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01486 538 Pfam Glycosyl hydrolase family 14 89 496 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 245 267 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 391 414 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 373 384 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 428 450 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 356 372 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 320 339 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 53 509 IPR001554 GO:0000272|GO:0016161
Vian1g01486 538 SUPERFAMILY (Trans)glycosidases 84 503 IPR017853 -
Vian1g01486 538 PRINTS Plant beta-amylase signature 394 404 IPR001371 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Plant beta-amylase signature 235 244 IPR001371 GO:0000272|GO:0016161
Vian1g01486 538 PRINTS Plant beta-amylase signature 476 490 IPR001371 GO:0000272|GO:0016161
Vian1g01486 538 MobiDBLite consensus disorder prediction 46 65 - -
Vian1g01486 538 Gene3D Glycosidases 76 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01486 Vian-Chr1 16427052 16429550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01486 1 538 Glycoside Hydrolase AT4G17090 69.035 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01486 K01177 - gmx:100818063 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01486 1 16427052 16429550 Vian1g01486 1 16427052 16429550 ECH