Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01477 ATGGGCTGTTTCGTCTCTCGGCCTAGAAGAAAGTTTCCTGCACAGGAGAAGACAGTAACTCTTGCATCAGAAACTGCTTTTACTGTTAGTGAGGTTGAAGCACTGTATGAGCTTTTTAGGAGCATCAGCAGTTCTGTTATCGATGATGGACTGATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAAAACAAGAAAAAGGAGAACATCTTTGCAACTCGGATCTTTGATCTCTTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCGCTCAATGTTTTCCATCCAAATGTGTCATTAGAAGACAAGATAGCCTTTTCATTTAGGCTCTATGATTTGCGCAATACTGGCTTTATAGAGCGTTCAGAGGTTAAAGAAATGTTAATTGCACTTCTTTATGAATCGGACATGAAGTTGGCAGATGATGTCATAGAAACAATTCTGAACAAGACTTTCTTGGAAGCTGACCTAAACGAAGATGGGAAAATAGACATGGAGGAGTGGACAAATTTTGTTGCTAAGAATCCATCACTATTAAAAATCATGACCCTACCTTATCTGAGGGACATAACAACTTCTTTCCCAAGTTTTATTTTTAACTCTAACGTGGATGAAGTTGCTGCATAA 642 0.3832 MGCFVSRPRRKFPAQEKTVTLASETAFTVSEVEALYELFRSISSSVIDDGLISKEEFQLAIFKNKKKENIFATRIFDLFDVKKKGVIDFEDFVRSLNVFHPNVSLEDKIAFSFRLYDLRNTGFIERSEVKEMLIALLYESDMKLADDVIETILNKTFLEADLNEDGKIDMEEWTNFVAKNPSLLKIMTLPYLRDITTSFPSFIFNSNVDEVAA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01477 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Vian1g01477 213 SUPERFAMILY EF-hand 22 202 IPR011992 -
Vian1g01477 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Vian1g01477 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Vian1g01477 213 FunFam calcineurin B-like protein 3 17 210 - -
Vian1g01477 213 Gene3D - 18 211 - -
Vian1g01477 213 PANTHER CALCINEURIN B 2 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vian1g01477 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Vian1g01477 213 PRINTS Recoverin family signature 75 96 - -
Vian1g01477 213 PRINTS Recoverin family signature 122 140 - -
Vian1g01477 213 PRINTS Recoverin family signature 168 188 - -
Vian1g01477 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Vian1g01477 213 CDD EFh 108 178 IPR002048 GO:0005509
Vian1g01477 213 SMART efh_1 71 99 IPR002048 GO:0005509
Vian1g01477 213 SMART efh_1 152 180 IPR002048 GO:0005509
Vian1g01477 213 SMART efh_1 108 136 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01477 Vian-Chr1 16356703 16359531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01477 1 213 EF-hand Containing Proteins AT4G17615 74.178 3.46e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01477 K06268 - gmx:100527380 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00427 10 3834025 3836008 Vian1g01477 1 16356703 16359531 PCT