Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01395 ATGTCTCCAAAATCAAAAGCTAAAGCCATGTTCTTCATCTTCAAAATAACAATGTTAAACTTTTTGCCACCAATATATGCATGTGGTCATTGCACTCCGCCACGTCACCCCAAGCACCCACCGCATCACGGCGGAGGCACGCCAAAAGTATCCCCTCCTCTCCCACCGATCATAATCAACCCTCCGCTGGTGCCCCCGCCGGTTGTGATTTACCCTCCACCAAGCTCACCGCCGTACTCGCCGCCGTACTCGCCGCCGCACCGGACATGCCCAATTGATGCCCTGAAATTGGGACTTTGCTTGGACGTGCTCGGAGGATTGGTGCACGTGGGAATAGGGAACCCAGCGGAGAACGTGTGCTGTCCCGTAATACAAGGGTTGCTTGACCTTGAAGCTGCAATTTGTCTTTGCACCGTTATTCGGGCTAAGCTTCTGAACCTGAATATCTTCCTACCTCTTGCACTTCAAGTTTTGATCACTTGTGGGAAGACTCCTCCTCCTGGTTTTGTTTGTCCACCTCTGTACTGA 528 0.517 MSPKSKAKAMFFIFKITMLNFLPPIYACGHCTPPRHPKHPPHHGGGTPKVSPPLPPIIINPPLVPPPVVIYPPPSSPPYSPPYSPPHRTCPIDALKLGLCLDVLGGLVHVGIGNPAENVCCPVIQGLLDLEAAICLCTVIRAKLLNLNIFLPLALQVLITCGKTPPPGFVCPPLY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01395 175 CDD HPS_like 87 171 IPR027923 -
Vian1g01395 175 Gene3D - 88 173 IPR036312 -
Vian1g01395 175 Pfam Hydrophobic seed protein 89 172 IPR027923 -
Vian1g01395 175 SMART aai_6 90 171 IPR016140 -
Vian1g01395 175 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 92 173 IPR036312 -
Vian1g01395 175 PANTHER - 8 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01395 Vian-Chr1 15321789 15322316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01395 80 173 Acyl Lipid Metabolism Gene Families AT4G22490 34.043 3.02e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01395 - - gmx:100807391 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01395 1 15321789 15322316 Vian1g01395 1 15321789 15322316 ECH