Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01394 ATGGCTTCCAAAGCTTGTTCCTCCCTTGCCATTTTCCTCACACTCAACCTCATTTTCTTCTCACTTGTCTCTGCATGCGGTAGTTACTCATGCCCTGGTCCAAGCCCAAAGCCAAAGCCAACACCCAGCCCCAGCCCTAGTGGCTCCTGCCCCCGTGACGCACTCAAACTAGGTGTATGCGCCAATGTGCTCAACGGCTTGGTTAACGCCACCTTGGGTCAACCACCGGTTACCCCTTGCTGCTCCCTTCTCGATGGCCTCGTTGATCTTGAGGCTGCAGTCTGCCTCTGCACTGCTCTCAAAGCAAACATTTTGGGCATCAACCTCAACCTTCCCATCTCACTCTCCTTGCTTCTCAATGTTTGCTCCAGAACTACCCCACGTGATTTCCAGTGTGCTTAA 402 0.5299 MASKACSSLAIFLTLNLIFFSLVSACGSYSCPGPSPKPKPTPSPSPSGSCPRDALKLGVCANVLNGLVNATLGQPPVTPCCSLLDGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSRTTPRDFQCA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01394 133 Pfam Hydrophobic seed protein 50 133 IPR027923 -
Vian1g01394 133 CDD HPS_like 52 132 IPR027923 -
Vian1g01394 133 PANTHER - 7 132 - -
Vian1g01394 133 FunFam pEARLI1-like lipid transfer protein 1 48 133 - -
Vian1g01394 133 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 52 132 IPR036312 -
Vian1g01394 133 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vian1g01394 133 Gene3D - 49 133 IPR036312 -
Vian1g01394 133 SMART aai_6 50 132 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01394 Vian-Chr1 15315113 15315514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01394 43 132 Acyl Lipid Metabolism Gene Families AT4G22490 39.785 1.58e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01394 - - gmx:100500016 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01394 1 15315113 15315514 Vian1g01394 1 15315113 15315514 ECH