Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01297 ATGAACAACAATAATCCGCCAAAAAATGCTGCAACGCCGTCGTTTTTCACCAACCCGGCTGCACCCTCAATCCCCATGAACCACCCATCACCCCACCTTCTCTCACAGACGCAGCCTCAACCGCAAGCTGGTGCCTCTCACTTCCATGGCCATTTTCAGCTCTCGCAACCGCAAATCCACGTCCTCGCACAGCCACACCCTGTTCCTCCCCCACAGGTGCATAACAATTCCAATACCAATGCCAACGTCGCAACACCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCAGGTTCCTCCAACGCCACCCAATCCTCTGCCTTCAAGACCATGGAACTTACCGTGGCGCCTCCTCGGAAAAAGAGAAGCTTTCCCGATAAGCTCATTCCCGACAAGGTGGCCAAGCTTGTGCCCGAGTCTGCTATTTATGCCAAGTTGCTTGAACTTGAGACCCACGTAGATTCTGTTTTGGTTAGGAAGAAAATTGATGTGCAGGAGAATTTGAGAAACCCTCGCTGTGTTAGGAGAACGCTTAGGATTTATGTGTATAATACATTTTCGAAACAGGTGAAAGTGGAACCTGGGAAGATAGATGTGGAGGAGCTTTCTTGGGTTCTCAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATCCTGTGGCAGATGGAGTTTTGCCTAAAGAAAATCCAAGATTCTCGGCTTTCTTCAAGAAGATTACCATTTACTTGGATCAGGGTTTCTATCCGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCGACTGCGCAGCGCGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACGGCGGTTGTTAGAATGTCAATGAATTATTCGCCTGACAAATTTATGGTATCGGCTCAGCTGGCTAGAGTGTTAGGGGTTGAGTTTGACTCCCGCTCTAGGATCATTGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGTTGCAGAGTCCCAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTTTCGGTGGCTTCGCAGAAGATATCACAGCATTTGTCACCTCCGCAGCCTATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACGTGTTACGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGATATGTCTTCATTCTTGGAAAGCACTGAGAAGCACAAAGAGATTGATGCTTTTGATAAACTGATATCTGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCGGAGTTTATTAATGCTTTGATAGCTTCTCAAAGCAAGGATCTGAAGCTTATTGCTGGAGATGTGAGCCATAGTGTTGAGAATGAACGGCGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCGTTCGCTACCTGACCAGGAAAAATGCTCGAAGTGATGCTCCTGGAAACATCTGA 1536 0.4772 MNNNNPPKNAATPSFFTNPAAPSIPMNHPSPHLLSQTQPQPQAGASHFHGHFQLSQPQIHVLAQPHPVPPPQVHNNSNTNANVATPAPPKRANHKPPSRPPGSSNATQSSAFKTMELTVAPPRKKRSFPDKLIPDKVAKLVPESAIYAKLLELETHVDSVLVRKKIDVQENLRNPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEELSWVLRITGRVLEDGKDPVADGVLPKENPRFSAFFKKITIYLDQGFYPDNHVVVWDSARSTAQRDGFEVKRKGDKEFTAVVRMSMNYSPDKFMVSAQLARVLGVEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLPLEKDMSSFLESTEKHKEIDAFDKLISDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLIAGDVSHSVENERRSEFYNQPWVEDAVVRYLTRKNARSDAPGNI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01297 511 ProSiteProfiles SWIB/MDM2 domain profile. 292 369 IPR003121 -
Vian1g01297 511 SMART swib_2 293 372 IPR019835 -
Vian1g01297 511 Gene3D SWIB/MDM2 domain 289 374 IPR036885 -
Vian1g01297 511 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 108 466 - -
Vian1g01297 511 MobiDBLite consensus disorder prediction 98 115 - -
Vian1g01297 511 MobiDBLite consensus disorder prediction 1 48 - -
Vian1g01297 511 Pfam SWIB/MDM2 domain 296 367 IPR003121 -
Vian1g01297 511 SUPERFAMILY SWIB/MDM2 domain 288 377 IPR036885 -
Vian1g01297 511 CDD SWIB_like 299 367 - -
Vian1g01297 511 MobiDBLite consensus disorder prediction 63 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01297 Vian-Chr1 14003793 14007964 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian1g01297 SWIB 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01297 K11650 - gmx:100817271 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01297 1 14003793 14007964 Vian1g01297 1 14003793 14007964 ECH