Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01278 ATGGAAGTTGTGTGTGGAAGTGGGGTTTGCGTCTCATCTCTTCCGCGCTCATCAACGATTACCAGAAGCACTGTTCCTCAATTCCGAGTCAGTTACCAATACCTAACACCGTTTCCTTCACAATCCCATCTATTCTCCTATCACCCTCCGCCCTATGCTAAAACCCTCCGTGCCAGAACCACCACCAAACCCGCTATTTTCCTTCCCCACTTAGTTGCATCTCTGCAGCAAGTTGACCAGACTTACATAATGGTGAAGCCCGACGGCGTGCAACGTGGCCTCGTCGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTGACTGGCTTGAAGCTCTTCCAGTGCTCTAAAGAGTTAGCTGAGGAGCATTACAAGGACCTAAACCAAAAGTCATTCTTCCCCAAGCTCATTGACTATATTACTTCTGGTCCTGTTGTTTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCCGCACGTAAGCTTATAGGGGCTACTGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATGTAGTTCATGGCAGTGACAGTCCCGAAAATGGAAAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCGATTGGACCCCCGTTCAAGCACCGTGGCTGAGAGAATAA 681 0.4787 MEVVCGSGVCVSSLPRSSTITRSTVPQFRVSYQYLTPFPSQSHLFSYHPPPYAKTLRARTTTKPAIFLPHLVASLQQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLNQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGELCDWTPVQAPWLRE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01278 226 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 73 225 - -
Vian1g01278 226 CDD NDPk_I 80 208 - -
Vian1g01278 226 PRINTS Nucleoside diphosphate kinase signature 145 162 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 PRINTS Nucleoside diphosphate kinase signature 189 208 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 PRINTS Nucleoside diphosphate kinase signature 81 103 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 PRINTS Nucleoside diphosphate kinase signature 125 144 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 PRINTS Nucleoside diphosphate kinase signature 166 182 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 Gene3D - 74 226 IPR036850 -
Vian1g01278 226 Pfam Nucleoside diphosphate kinase 80 212 IPR034907 -
Vian1g01278 226 SMART ndk_5 78 215 IPR034907 -
Vian1g01278 226 SUPERFAMILY Nucleoside diphosphate kinase, NDK 78 224 IPR036850 -
Vian1g01278 226 Hamap Nucleoside diphosphate kinase [ndk]. 78 213 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g01278 226 ProSitePatterns Nucleoside diphosphate kinases active site. 189 197 IPR023005 -
Vian1g01278 226 FunFam Nucleoside diphosphate kinase 75 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01278 Vian-Chr1 13791571 13794925 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01278 K00940 - gmx:100500478 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01278 1 13791571 13794925 Vian1g01278 1 13791571 13794925 ECH