Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01262 ATGGGTGGTTGGGAAGAAGAAAGTCAAGGGGCCTTGTTCATGTATTGTGAGACCCAAGATTTTGATGGTAGGGATTTGGGTAAACGCCCTTTGTCGTGGGACGCTATTTGCAGGAACCCAAAAGGTTTATGCTTGAATTCTGTTTTTGTGCTAGTAATGGCGAAAACAAACAAGTCGCAAGAAGAAATTGCGTGTGAAGCTATTAAACACGCTTTGAAGGCACTGCGGAAGCGCCATTTGCTTGAAGAAGCCGCTCATGGTCCCGCTGTTCTAGCTCTTTCTAGACCCTTTGTTTCTCAGGGCTCTGAATGGAAAGAGAAAGCAGAGAATCTTCAAGTGGAACTTCAGCATTGCTACAAAGCTCAATCTCGGCTGTCTGAGCAACTTGTTGTGGAAGTAGCTGAGTCCAGAGCTTCAAAAGCGTTGGTTCAAGAGAAAGAAATTGCAGTTGCTGATTTGCAAAAGGAATTGACCGAATTGAGGGATGAGTGCTCTCAATTAAAGGAAGACTTGGAAGAAAAGTTTAAATCTCTAGAAGTGCTTGTTAGTGAGAATACTGAACTTAAAGCCCAACTGGAGCAGATGACTACTAAAGCAAATAAAGCTGAAGCTGAGAATAAGATGTTGATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTAAACGAGGCTAATGCACTATACGAAGACATGGTCGAGAAACTAAAGGCCAGTGGCTTAGAGCAACTTGCAAGGCAGCAGGTGGATGGCATAGTTCGCCAAAGTGAAGAAGGTGCTGAGTTTTTTTTAGAGTCAAACATTCCTTCCACATGTAAATACAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCCAGTAAATTGATTACTGGGGGACAGGATCGCTTAGTTAAAATGTGGGATACAAATACCGGATCCTTATCTTCTACACTTCATGGCTGCCTTGGCTCAGTATTAGATCTCACTATCACCCATGATAATCGATCTGTCATTGCTGCAAGCAGCTCGAACAACTTGTATGTATGGGATGTCCACTCAGGCCGTGTCCGTCATACCCTTACTGGCCACACAGATAAAGTTTGTACTGTTGATGTGAGCAAGATTTCAAGTCGTCATGTTGTCAGTGCTGCTTATGACCGTACCATAAAAGTTTGGGACCTAGTGAAAGGTTACTGCACTAACACAATCATTTTTCACAGCAACTGCAATGCTCTCTCCTTCAGCATGGATGGTCAGACCATATTTTCAGGACATGCTGATGGTAATCTTCGGTTATGGGCCATTCAGAGCGGAAAGCTACTCAGCGAGGTTGCTGCACATACATCTGCAGTTACATCAATATCCCTTTCTCGAAATGGAAATTTTGTACTGACCAGTGGAAGGGACAATTTGCATAATTTGTTTGACGTGCGATCTCTTGAAGTTTGTAGCACACTAAAAGCGGCAGGAAACAGAGTTGCTTCTAACTGGAGCCGCTCCTGTTTTAGTCCAGATGACAATCACGTTGCTGCTGGGTCTGCCGATGGATCTGTGTATATTTGGTCAATTTCTAAAGGTGATATAGTCGGTACGCTCAAGGAACATACTTCTTCTGTTCTATGTTGTACGTGGAGCGGGATCAGAAAACCCCTAGCTTCAGCTGACAAGAATGGGGTAGTTTGTGTCTGGACATAA 1701 0.4386 MGGWEEESQGALFMYCETQDFDGRDLGKRPLSWDAICRNPKGLCLNSVFVLVMAKTNKSQEEIACEAIKHALKALRKRHLLEEAAHGPAVLALSRPFVSQGSEWKEKAENLQVELQHCYKAQSRLSEQLVVEVAESRASKALVQEKEIAVADLQKELTELRDECSQLKEDLEEKFKSLEVLVSENTELKAQLEQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVEKLKASGLEQLARQQVDGIVRQSEEGAEFFLESNIPSTCKYRLRAHEGGCASMLFEYNSSKLITGGQDRLVKMWDTNTGSLSSTLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVHSGRVRHTLTGHTDKVCTVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFHSNCNALSFSMDGQTIFSGHADGNLRLWAIQSGKLLSEVAAHTSAVTSISLSRNGNFVLTSGRDNLHNLFDVRSLEVCSTLKAAGNRVASNWSRSCFSPDDNHVAAGSADGSVYIWSISKGDIVGTLKEHTSSVLCCTWSGIRKPLASADKNGVVCVWT 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
Vian1g01262 566 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 533 IPR001680 GO:0005515
Vian1g01262 566 ProSitePatterns Trp-Asp (WD) repeats signature. 297 311 IPR019775 -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 445 IPR001680 GO:0005515
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 487 IPR001680 GO:0005515
Vian1g01262 566 Gene3D - 501 566 IPR015943 GO:0005515
Vian1g01262 566 Coils Coil 143 212 - -
Vian1g01262 566 SMART WD40_4 271 310 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 439 478 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 313 352 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 527 566 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 481 524 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 355 395 IPR001680 GO:0005515
Vian1g01262 566 SMART WD40_4 398 436 IPR001680 GO:0005515
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 566 IPR001680 GO:0005515
Vian1g01262 566 FunFam Autophagy-related protein 16 isoform A 409 566 - -
Vian1g01262 566 SUPERFAMILY WD40 repeat-like 269 565 IPR036322 GO:0005515
Vian1g01262 566 Coils Coil 221 241 - -
Vian1g01262 566 CDD WD40 274 565 - -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 315 - -
Vian1g01262 566 Pfam Autophagy protein 16 (ATG16) 102 225 IPR013923 -
Vian1g01262 566 CDD Atg16_CCD 140 228 - -
Vian1g01262 566 Gene3D - 144 214 - -
Vian1g01262 566 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Vian1g01262 566 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Vian1g01262 566 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Vian1g01262 566 Gene3D - 262 500 IPR015943 GO:0005515
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 566 - -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 404 IPR001680 GO:0005515
Vian1g01262 566 Pfam Anaphase-promoting complex subunit 4 WD40 domain 409 457 IPR024977 -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 396 - -
Vian1g01262 566 PANTHER AUTOPHAGY PROTEIN 16-LIKE 60 537 IPR045160 GO:0000045
Vian1g01262 566 FunFam Autophagy-related protein 16 isoform A 266 408 - -
Vian1g01262 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Vian1g01262 566 Pfam WD domain, G-beta repeat 529 565 IPR001680 GO:0005515
Vian1g01262 566 Pfam WD domain, G-beta repeat 503 524 IPR001680 GO:0005515
Vian1g01262 566 Pfam WD domain, G-beta repeat 274 310 IPR001680 GO:0005515
Vian1g01262 566 Pfam WD domain, G-beta repeat 358 395 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01262 Vian-Chr1 13638508 13641169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01262 362 565 Miscellaneous Gene Families AT5G08390 21.951 1.51e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01262 K17890 - gmx:100778336 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01262 1 13638508 13641169 Vian1g01262 1 13638508 13641169 ECH