Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01261 ATGTTCCCGCTTCAGCTACTCCCTCTTCATTCACTCCACCCTTCTCAACCCTTCACTTCCAAAATGAACAATTCCGCAACGCTCCAACAACGGTGCGTGGCTTCCCTTAAAACCCTAACACCCCACATTACCTGTCTCGCGGTCCACCGTAACCTCCTCTACGCCGCTTCCCTAAACCTCATCAACGTCTTCGACCTCTCTCATTACTCCCACATCGACGCCTTCAACCAAAGCCCTGCCTCAGGCTTTGTCAAGTCCATCGCCTTCACCAACTCGAGGGTTTTCACCGCTCACCAAGACCGCAACATTCGCGTCTGGCTCATCACTCCCTCCAAACGACATCGTCTCCTCTCCTCCCTCCCCACCGTCACCGACCGTCTCCGCCGCTGCATCGTTCCCCGAAACTACGTCAGCGTGCGCCGCCACAAGTCCAGGCTCTGGATCCAGCATTGCGACACCGTCTCCGGTTTAGCCGTGAACCAGAGGCTCATGTATTCGGTTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTGTTCAGTTTCCGGTGTTTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTCTGGTTGTTAACCGAGATGGTATCGTATACACCGCCTCCGCGGATGGGAGCATCAAGGTTTGGAGAAGAGACTGCGAGGGGAAACGGCACGTGTTGGTGAGCAGCATTGGAAGGCAGAAGTCGACGGTGAATGCGCTTGCGTTGGACGGCGGGGGCGCGGGGTTGTTTTCCGGCGGTTGCGACGGCGAGATATGCCGATGGGAGTGGGGGTGCGAGGAAAACGGCGCGGTGAAGATGGAGACGTTGAGGGGTCACAGTGGAGCCATACTGTGTCTTATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCCGCGGATCTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGGAGTGGGTATAGTTGCAGGGCGGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCCTTTGCGGGAGGTGACGATGACTCAAACGGCGTCGTTAGTCTATTCAGTGGAAGCCTAGACGGGGAGATTAAGGTGTGGGAGTTGTTTGGTTCGGCCTGA 1101 0.5677 MFPLQLLPLHSLHPSQPFTSKMNNSATLQQRCVASLKTLTPHITCLAVHRNLLYAASLNLINVFDLSHYSHIDAFNQSPASGFVKSIAFTNSRVFTAHQDRNIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVSVRRHKSRLWIQHCDTVSGLAVNQRLMYSVSWDKSFKVWDLFSFRCLESVKAHEDAINALVVNRDGIVYTASADGSIKVWRRDCEGKRHVLVSSIGRQKSTVNALALDGGGAGLFSGGCDGEICRWEWGCEENGAVKMETLRGHSGAILCLIHVAGLLASASADLTVRIWQRERGRSGYSCRAVLEGHEKPVKSLVAFAGGDDDSNGVVSLFSGSLDGEIKVWELFGSA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01261 366 ProSitePatterns Trp-Asp (WD) repeats signature. 348 362 IPR019775 -
Vian1g01261 366 SMART WD40_4 225 264 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 180 218 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 141 177 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 29 65 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 68 107 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 271 308 IPR001680 GO:0005515
Vian1g01261 366 SMART WD40_4 315 361 IPR001680 GO:0005515
Vian1g01261 366 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 362 IPR045182 -
Vian1g01261 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 217 IPR001680 GO:0005515
Vian1g01261 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 217 - -
Vian1g01261 366 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Vian1g01261 366 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Vian1g01261 366 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Vian1g01261 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 317 IPR001680 GO:0005515
Vian1g01261 366 FunFam BnaA09g28200D protein 137 222 - -
Vian1g01261 366 Gene3D - 129 365 IPR015943 GO:0005515
Vian1g01261 366 Gene3D - 21 128 IPR015943 GO:0005515
Vian1g01261 366 SUPERFAMILY WD40 repeat-like 31 362 IPR036322 GO:0005515
Vian1g01261 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 366 IPR001680 GO:0005515
Vian1g01261 366 Pfam WD domain, G-beta repeat 182 217 IPR001680 GO:0005515
Vian1g01261 366 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Vian1g01261 366 Pfam WD domain, G-beta repeat 317 360 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01261 Vian-Chr1 13626991 13628091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01261 90 361 Acyl Lipid Metabolism Gene Families AT3G18860 25.000 7.80e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01261 - - aprc:113874855 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01261 1 13626991 13628091 Vian1g01261 1 13626991 13628091 ECH