Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01239 ATGGAGTCTGCTCTAGTGATCAAGGTGAAATATGGGGATACCCTCCGGCGCTTCACTGCCTCTGTGGACGAGATTAATCGACTGGATCTCGACATGGTTGGGTTGAGACAGAAGATATGTTCTATCTTCGGTTTCAGTGCTGATGCAAATTTAGTTCTGAGATATGTTGATGAAGATGGAGACTTGGTGACTTTGGTTGAGGATGATGATTTGCGTGATGTGATGAGGCAGCAATTGAAATTCTTGAGAATTGAGGTACTTATGAACAATGATGGCGGTGCTAAATCGACTGCTTGGTCTACTGGAAGTGCCACCCCCTTAAAATCTCCTTCTGTCACAAACCCACCTCTGGGTAGAAATACTATATTACACGAGGCTCTATCTAAATTGTCTCTTTCAAAAGCAGCATCTTCTACTCCCGTGGTTGATAATATTGCCAATTCAATTTTGAAAATAGGACAATCTGTTCTAAATTCTCATTTCCAGCCTCGTGATACAGCTGGTACAAGTTCAAAAACGGGTCCTGGAGAACATGCCACTTCTAATGCAAAAGGTTCTCAATCTTCATATGTGGACTCAGCCTCCAATTCTACTGTCCATGGTGAGAGTGCCACTCCCTTAAGATTTCCTGTTCCAAACCCATCTCTGAGCCCAAATGCAGATAAAGTTGGCATTTCATCTCCTGTGCCTGATCCAGTACGTGAGCTTATTTCCAATTTGTTGTATCCAAATGCTGCATCTTCTAGTCAGCTGCCTGTTAATCTTGCTGATTTAATTTCCCTACTGGGACATTCTGTTTTAAATTCTTATTGCGAGCCTCATGTTGCAACTGGTCCATTCTCTAAAAATGGTGTTCCTGAAGAACCTATCTCTGGTGAAGCAAGAGATCCACAGATGCCATCTGTGGACTTGGCTTCCAATGCCACTCAACATGTGGAGGCTGAAAACCTAGTTAGAGATGCAGCCTCTGCTTCTAATGCCACTCAACAGGTGGAGACTGAAAACATAATTAGAGATGTAGCCGGTCAACATTTGGAAGCTGGGAATGTAATCAGTGCAACTACAGCTGCGGAAGTTTCCACAGTTGATCTCAATATCCCTCCTTGTGATCCCTATTCATCTCAGTCCACAAATGTGAATAAGGCTCCACTTTCATCAGAAGTCCCTGATGGTGATTGCAGGAAGGGTAAAATGTCAACTGTCTATAGTTCTGCTGGTAAGGTTGACAGCAGTGGTACATCCTCAAGTCCTGCTGGTCCTAATGACAGTTCAACCCAGACTACTTCATTGAATGCTGGTGGTTTCTTTGAATGTCCATTTTCTGGGACATATATTAATTCTTGGACACCACATTTTGGAAACTCTCAAATGCCCCCCTTTAAAAGGAGCCATCGTCACACTGAGGCAATGACTGGTATGTTCCACAAAGGTGTGCGTTGTGATGGTTGTGGTGTCTATCCAATAACTGGACCTCGGTTCAAATCCAAAGTGAAGGAAAATTATGATCTCTGCCACATTTGTTACAACGAAATGGGTAATGGTACAGATTATATCAGAATGGACCGTCCGGCTCGTTTCCCTCGATGTGTATATGAGCAATCCAAAAACTTTCCAACATTACCGCCTCATACTTTTAAGAAAAGTGCCATTTTGAAGCATGCAAGACCAAAGTTAGATAGTCAGTTCATTTTGGATGTCAATGTGCTAGACGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACTGTAGCGTGGCCCAAGGGAACTAAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGACTTAGAGGTTCAGAATGGTGTCCCTATCGAGAAGGAACTTGACATTGCAGTTGACTTTGCAGCACCTCGGATACCTGGTCGATACACATCATACTGGAGGTTGGCAACTTCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTGTACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAGGGATTGAACTTGAATATTCCACTTGATGTCAGTGGATCTGAAGGACCTCTGCTTATAGATATCAATGTTAGGCCTGCCGAGGATGATACTTTTCTTCAAACCCGCATTCCTAATGCTCTGATTCAACCTGCTGAACAGGTTGATAAGGAACCAATGTTGGAACTGGAAAAGGAATTCCCTATAAATGAAGCTACATTTGTTGGCCCTTCTGCCTCAGCCCCTGCTGCAACCTCCCTGGCACCTTCCTCAATCTCTTATCCTATTATTGATTTATCTGAAACAACACCAGCTGTTCCCTCTGATCAGCAATCCTCCACTGTGGCTGTACCATCATCATCTATTATGGGGACCGGTGGAATTAACTCTCTGGAGGAGAGTCTACTTAAAGAACTTGAGGTGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGGTCTTGAGGATGAATGAGTATGATCTGGAGCAATCCATCGTCGATCTATGTAGTGATGTCTATAATGTTTCTGAGTGGGACCCTATCCTTTTAGAGTTGCAAGAGATGGGTTTCCGTGATCAAGAGATGAATAAGAGGTTGCTTAAGAAAAACAATGGAAGCATAAAGCGTGTTGTTATGGATTTAATCCAAGGAGAGTAG 2673 0.431 MESALVIKVKYGDTLRRFTASVDEINRLDLDMVGLRQKICSIFGFSADANLVLRYVDEDGDLVTLVEDDDLRDVMRQQLKFLRIEVLMNNDGGAKSTAWSTGSATPLKSPSVTNPPLGRNTILHEALSKLSLSKAASSTPVVDNIANSILKIGQSVLNSHFQPRDTAGTSSKTGPGEHATSNAKGSQSSYVDSASNSTVHGESATPLRFPVPNPSLSPNADKVGISSPVPDPVRELISNLLYPNAASSSQLPVNLADLISLLGHSVLNSYCEPHVATGPFSKNGVPEEPISGEARDPQMPSVDLASNATQHVEAENLVRDAASASNATQQVETENIIRDVAGQHLEAGNVISATTAAEVSTVDLNIPPCDPYSSQSTNVNKAPLSSEVPDGDCRKGKMSTVYSSAGKVDSSGTSSSPAGPNDSSTQTTSLNAGGFFECPFSGTYINSWTPHFGNSQMPPFKRSHRHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCHICYNEMGNGTDYIRMDRPARFPRCVYEQSKNFPTLPPHTFKKSAILKHARPKLDSQFILDVNVLDGTMMAPSTAFTKIWRMRNNGTVAWPKGTKLVWIGGDKFSDSHSVDLEVQNGVPIEKELDIAVDFAAPRIPGRYTSYWRLATSSGHKFGQRVWVLVQVDASLKDSFYDNSQGLNLNIPLDVSGSEGPLLIDINVRPAEDDTFLQTRIPNALIQPAEQVDKEPMLELEKEFPINEATFVGPSASAPAATSLAPSSISYPIIDLSETTPAVPSDQQSSTVAVPSSSIMGTGGINSLEESLLKELEVMGFKQVDLNKEVLRMNEYDLEQSIVDLCSDVYNVSEWDPILLELQEMGFRDQEMNKRLLKKNNGSIKRVVMDLIQGE 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01239 890 SUPERFAMILY UBA-like 850 888 IPR009060 GO:0005515
Vian1g01239 890 SUPERFAMILY RING/U-box 469 524 - -
Vian1g01239 890 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Vian1g01239 890 FunFam protein NBR1 homolog 849 890 - -
Vian1g01239 890 CDD NBR1_like 556 668 IPR032350 -
Vian1g01239 890 Gene3D - 796 843 - -
Vian1g01239 890 MobiDBLite consensus disorder prediction 403 426 - -
Vian1g01239 890 CDD UBA_NBR1 849 887 - -
Vian1g01239 890 Gene3D - 1 88 - -
Vian1g01239 890 FunFam next to BRCA1 gene 1 protein-like 553 672 - -
Vian1g01239 890 ProSiteProfiles Zinc finger ZZ-type profile. 475 525 IPR000433 GO:0008270
Vian1g01239 890 MobiDBLite consensus disorder prediction 95 116 - -
Vian1g01239 890 SMART zz_5 474 519 IPR000433 GO:0008270
Vian1g01239 890 SUPERFAMILY CAD & PB1 domains 4 80 - -
Vian1g01239 890 Gene3D Immunoglobulins 553 671 IPR013783 -
Vian1g01239 890 Gene3D - 844 890 - -
Vian1g01239 890 MobiDBLite consensus disorder prediction 372 426 - -
Vian1g01239 890 MobiDBLite consensus disorder prediction 160 222 - -
Vian1g01239 890 MobiDBLite consensus disorder prediction 160 203 - -
Vian1g01239 890 Pfam Ig-like domain from next to BRCA1 gene 567 667 IPR032350 -
Vian1g01239 890 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Vian1g01239 890 Pfam Zinc finger, ZZ type 475 510 IPR000433 GO:0008270
Vian1g01239 890 SMART PB1_new 4 89 IPR000270 GO:0005515
Vian1g01239 890 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 3 889 - -
Vian1g01239 890 Gene3D - 467 546 IPR043145 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01239 K17987 - gmx:100778692 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01239 1 13427605 13431793 Vian1g01239 1 13427605 13431793 ECH