Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01238 ATGCAAGCCACCATGGATCCCCACCCAGGAACCTTCCCCGTTCTCTCCTACGTCATGTCTCGTCTCCCTTCCTTCGGCCCCAGAAGCCCCGCCTCCATCTCCGCCTCCTCCGCCTCCGCCTCCACCTCCGACTCCGCCTCCACTTCCCGTTCCCATCACGTCGACATCGAACAGCCACCTCACTCCGATGCTTCCTCTTCCTCCATCGTGGGCCAAATGCCCAATCTAGCCAACCCGGAAATGCTGGCCTCCATGACCCGCGCCATCTCCGACGTTGCCCAGGCTCGATCCGTCTTCAAGGTCATGGGGCCCCGGCCCACCCACGAGGAGGTCGACGAGGCCAAGGCTAAGCTAGCGGACCTGGAAGCCCACCTGTCCCGCCAACTGGAAGAGATCGTGGGCCTGCCCAGGCCCCCGGAGATCGACGAGGCCCGCTGGACTGCCCACATCGCGGAGAAGGAGAAGGTCATCAAGGAATCGACGGAGAAAGAGAAGCGCATTTTGAAGTCCATCATTCAGCTCGACAACATGCACGACGCCTACGGTAAGCTCCTCAAGGACGCCGAGAAGCGCTTGGTCAAGATTTACGAGAACGACGGCGCCGACTACGACAACAACAACGAAAACGAAGAGGACGACGAGGACAGTGTTCAAGTGAAAGAACAGGTTGAGGGGATTTTGAAAGAGGCCTACGGAAAAGGGGTGGAGCGAATCGCTCTCTCCGGCAAGCGCCTCAAGTACCTGCCTGAAGCATTTGGCCACATTCCTGCATTGATCGTCCTCGATGTCTCCACCAATCAACTTTCGGTGATTCCTGATTCCATATGTGGATTGGAAAGTCTCGAGGAGCTTAATCTCTCTTCCAATGCTTTGGAGTCGCTACCCGAGTCAATTGGCTTGTTGCAGAAGTTGAAGGTCCTCAATGTGTCCGGAAACAAGCTGTCTGCTCTTCCTGATTCCATTAGTAAGTGCAGTTCATTGGTGGAGCTAGATGCAAGCTTTAACAGCCTGTCGTATTTGCCAACAAACATTGGATTTGAGTTGCATAATTTACAGAAGCTTATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCGTCAATTTGTGAGATGAAATCCCTGCGTTATCTGGATGCTCACTTCAACGAGCTGCGCGGGCTTCCTGTTGCGATTGGGAAATTGACTAATCTTCAAGTTCTAAACCTGAGCAGTAACTTCAGTGACCTCAGAGAACTTCCAGAGACGTTTGGTGATTTGATCAACCTCAGGGAGTTAGATCTGAGCAACAACCAAATTCATGCACTTCCTGATTCTTTTGGTCGCCTTCATAACTTGACCAAGCTAAACTTGGAACAGAATCCTGTCGAAGTGCCACCTATGCATGTTGTGGGTGAAGGGCTCCAAGCCATAAAAGGGTTCATGTCTCAGAGATGGATTGATATATTGGAGGAGGAAGAAAGGAAAACCACCCAGGAGGTGCAAGAACAAGGAGAAAATGGGTGGTTAACGCGAACCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCCCCAAAAACTCCCAAAGAAGCGTATCTTAATCAGCAGCTATGA 1608 0.5155 MQATMDPHPGTFPVLSYVMSRLPSFGPRSPASISASSASASTSDSASTSRSHHVDIEQPPHSDASSSSIVGQMPNLANPEMLASMTRAISDVAQARSVFKVMGPRPTHEEVDEAKAKLADLEAHLSRQLEEIVGLPRPPEIDEARWTAHIAEKEKVIKESTEKEKRILKSIIQLDNMHDAYGKLLKDAEKRLVKIYENDGADYDNNNENEEDDEDSVQVKEQVEGILKEAYGKGVERIALSGKRLKYLPEAFGHIPALIVLDVSTNQLSVIPDSICGLESLEELNLSSNALESLPESIGLLQKLKVLNVSGNKLSALPDSISKCSSLVELDASFNSLSYLPTNIGFELHNLQKLMIQLNKIRSLPSSICEMKSLRYLDAHFNELRGLPVAIGKLTNLQVLNLSSNFSDLRELPETFGDLINLRELDLSNNQIHALPDSFGRLHNLTKLNLEQNPVEVPPMHVVGEGLQAIKGFMSQRWIDILEEEERKTTQEVQEQGENGWLTRTTSWLKNVSENVTEMIMSPKTPKEAYLNQQL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01238 535 Coils Coil 479 499 - -
Vian1g01238 535 Pfam Leucine rich repeat 249 291 IPR001611 GO:0005515
Vian1g01238 535 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Vian1g01238 535 Pfam Leucine Rich Repeat 303 324 IPR001611 GO:0005515
Vian1g01238 535 ProSiteProfiles Leucine-rich repeat profile. 421 442 IPR001611 GO:0005515
Vian1g01238 535 FunFam Plant intracellular Ras-group-related LRR protein 9 153 339 - -
Vian1g01238 535 FunFam Plant intracellular Ras-group-related LRR protein 2 343 518 - -
Vian1g01238 535 Gene3D Ribonuclease Inhibitor 151 341 IPR032675 -
Vian1g01238 535 Gene3D Ribonuclease Inhibitor 342 471 IPR032675 -
Vian1g01238 535 SMART LRR_bac_2 255 274 - -
Vian1g01238 535 SMART LRR_bac_2 371 390 - -
Vian1g01238 535 SMART LRR_bac_2 419 438 - -
Vian1g01238 535 SMART LRR_bac_2 324 343 - -
Vian1g01238 535 SMART LRR_bac_2 301 320 - -
Vian1g01238 535 SMART LRR_bac_2 278 297 - -
Vian1g01238 535 SMART LRR_bac_2 394 415 - -
Vian1g01238 535 SMART LRR_bac_2 348 367 - -
Vian1g01238 535 MobiDBLite consensus disorder prediction 26 72 - -
Vian1g01238 535 MobiDBLite consensus disorder prediction 27 49 - -
Vian1g01238 535 ProSiteProfiles Leucine-rich repeat profile. 280 301 IPR001611 GO:0005515
Vian1g01238 535 ProSiteProfiles Leucine-rich repeat profile. 303 324 IPR001611 GO:0005515
Vian1g01238 535 Coils Coil 111 131 - -
Vian1g01238 535 PRINTS Leucine-rich repeat signature 281 294 - -
Vian1g01238 535 PRINTS Leucine-rich repeat signature 419 432 - -
Vian1g01238 535 SMART LRR_typ_2 301 324 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 278 300 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 325 347 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 394 418 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 348 371 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 255 277 IPR003591 -
Vian1g01238 535 SMART LRR_typ_2 419 442 IPR003591 -
Vian1g01238 535 SUPERFAMILY L domain-like 229 460 - -
Vian1g01238 535 PANTHER - 347 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01238 Vian-Chr1 13392926 13395250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01238 248 464 Receptor kinase-like Gene Family AT3G51740 33.929 2.00e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01238 - - vun:114179436 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01238 1 13392926 13395250 Vian1g01238 1 13392926 13395250 ECH
Vian1g01238 1 13392926 13395250 Vian4g00896 4 12708903 12711787 PCT