Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01235 ATGACAAGCAGCACCACTTTGCTTGCTGCTATTCTGAAACTTCTGATCATGTTCTTATTCGCAGGTTGGGTTGCTCTTTGGCTTCTGAAGCCCACCCAAATATGGACAAGAAAATGGAAACAATTAGAAGATAGCGCTAATAATACAATTTTTGGATACTATGGCCTTGGCTTCTCTGTGTACACGTTTCCTGTAATTGCTATTGCAATAATTGGACTTCTTTTATTGGATTTAAAAGTTGGATACCAAAGCAGAAATGCAAGAAGTCCATCAAAATCGAACTTCTTCTCAAATCCACTGGTAGTGAACAGCACGCTGGGAATCTTATCCAGTATTGAAATACTGGTAGCTTTCCTTTTTATTGTCTTCTTAGCATGGACCTACTACTCTCGTATTTCTTCAGACTTCAAAAAGTTGGTGCCATACAAATCACTGAAGTTGAATACATGGCAACTCAAGTATCACCGAGTAGCAACCCGGTTTGGCTTGCTATCAGAAGCTTGTCTGGCTTTGTTGCTCCTCCCTATTTTAAGAGGGTTGGCTGTGTTTCGTGTACTTGGCATTCAGTTTGAAGCTTCAGTTAGATATCACACATGGGTCGGAACTGCAATGATACTATTTGCTACAATACATGGTGCAAGCACTTTCTTGGTATGGGGGATCAGCCACCATATTCAGGATGAGATTTGGAAGTGGCAGAAGACCGGACGCATATACCTCGCTGGGGAGATAACACTTGTTGTGGGGCTAGTCATTTGGGTCACTTCTCTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACGCATCATTTCTATGTAATCTTTCTTGTATTTTTCTTGTTTCACGGTGGGGATAGGCACTTTTATACGGTTTTCCCAGGAATATTCCTTTTTAGCCTTGATAAATTGATCCGAATCATACAATCAAGTCCAAAAACATGCATGGTTTCAGCTAGAATTTTTCCTGGCAAAGCTGTGGAGCTAATTCTTCCCAAAGATCCAGGGTTGAAATATAACCCTACAAGTGTTATATTTTTGAAGATACCAACCATATCTCATCTTCAATGGCACTCTTTCAGTATAATATCTAGTTCCAGGGCTGATAACCACATTTTGTCAGTGATAATAAAATGTGAAGGGTGGTGGACTAATTCTCTTCACGACCTGATAAATGCTGAACTAGACAAAACTGAAGATAAAAGGAAGGGAATACCTGTTGCAATCGAAGGACCTTATGGACCTGCTTCTTTGGACTTTTTGAGATATGATACCCTTCTTCTGGTTGCTGGAGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCAGAAGCTAATTCAGCTGCCAGCAAAAGTAAAATTCCCTCGAGAATACAACTTGTCTATGTCATCAAGAAAGCAGAAGACTTCTGTCTGTTACATTCAATCTCTCATATGTTACTCAACCAATCAACTAAAAGTTTCCATCTGAACCTAAAATTGTTTGTAACCCGAGAAACACAAGCAGGGGTAGGAATTAGGGAGCTACTAAATGAGTTCTTTAAAGCAAGAACACTGCAAGTGAACAGCGTGTGTTCAAATTATGCAGCATACGGGCCCGAAAGTCCGTCTTGGATGGCTGCCATTGCAGGATTTTGCTCCATTACTTTTCTTATTTTCCTAATCTGTTTCAACCATATTATAATTCAATCTGGAAAGCGCTCCAAAACGGACAAAGAAAAGACTCCGTCTTGGGTCGTGGATCTTCTTCTGATAGCTGCCTTTGTCCTAGCTTTAGCCTGCAGCGCCTCGGTGGCAGGCTTTTTGAGATGGAGAAGGCTGAAGAAAGGGATTCCCCAAATATCGCATAGAGAAATTGAAGCCCTTGATCTATGTTCAGATGAAGCTAGGAATGCCCTCGAAGCACACGAAGTATATTTTGGGGGAAGGCCTAACTTTAAAGAAATATTTGGCAAGCTCCGAAATGAAAGCGATGAATCTAATATTGGATTGTTGGTTTGTGGACCTGAGAGCATGAAGGAATCGGTGGCACTCGCATGCAAGCAAGAATCCGAGTGTTTTGATGCAAAGAGAACAGAATCCTGCTTCACTTTCCACACTCTCAACTTCACGCTTTAG 2124 0.4105 MTSSTTLLAAILKLLIMFLFAGWVALWLLKPTQIWTRKWKQLEDSANNTIFGYYGLGFSVYTFPVIAIAIIGLLLLDLKVGYQSRNARSPSKSNFFSNPLVVNSTLGILSSIEILVAFLFIVFLAWTYYSRISSDFKKLVPYKSLKLNTWQLKYHRVATRFGLLSEACLALLLLPILRGLAVFRVLGIQFEASVRYHTWVGTAMILFATIHGASTFLVWGISHHIQDEIWKWQKTGRIYLAGEITLVVGLVIWVTSLPQIRRRKFEIFYYTHHFYVIFLVFFLFHGGDRHFYTVFPGIFLFSLDKLIRIIQSSPKTCMVSARIFPGKAVELILPKDPGLKYNPTSVIFLKIPTISHLQWHSFSIISSSRADNHILSVIIKCEGWWTNSLHDLINAELDKTEDKRKGIPVAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILAEANSAASKSKIPSRIQLVYVIKKAEDFCLLHSISHMLLNQSTKSFHLNLKLFVTRETQAGVGIRELLNEFFKARTLQVNSVCSNYAAYGPESPSWMAAIAGFCSITFLIFLICFNHIIIQSGKRSKTDKEKTPSWVVDLLLIAAFVLALACSASVAGFLRWRRLKKGIPQISHREIEALDLCSDEARNALEAHEVYFGGRPNFKEIFGKLRNESDESNIGLLVCGPESMKESVALACKQESECFDAKRTESCFTFHTLNFTL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01235 707 Pfam Ferric reductase NAD binding domain 425 682 IPR013121 GO:0016491
Vian1g01235 707 CDD NOX_Duox_like_FAD_NADP 319 500 - -
Vian1g01235 707 Gene3D - 409 545 IPR039261 -
Vian1g01235 707 Gene3D - 594 705 IPR039261 -
Vian1g01235 707 Pfam Ferric reductase like transmembrane component 162 282 IPR013130 -
Vian1g01235 707 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 296 421 IPR017927 GO:0016491
Vian1g01235 707 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 409 522 IPR039261 -
Vian1g01235 707 PANTHER NADPH OXIDASE 16 705 - -
Vian1g01235 707 SFLD Ferric Reductase Domain 32 705 - -
Vian1g01235 707 Pfam FAD-binding domain 319 419 IPR013112 GO:0016491
Vian1g01235 707 SFLD Ferric reductase subgroup (FRE) 8 686 - -
Vian1g01235 707 SUPERFAMILY Riboflavin synthase domain-like 319 417 IPR017938 -
Vian1g01235 707 FunFam ferric reduction oxidase 8, mitochondrial 409 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01235 Vian-Chr1 13358321 13361177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01235 182 707 Miscellaneous Gene Families AT5G50160 46.835 1.48e-174 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01235 K00521 - gmx:100816560 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01235 1 13358321 13361177 Vian1g01235 1 13358321 13361177 ECH