Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01230 ATGGGAATGATGGAAGAGGAGAGTAGCAACAGCAACACAGAAGGTGGAGCTTCGCTTCCATCGTCAGGTTCAGACGCCAAGAAGCGAAGAGTTACGTACTTTTACGAACCAACTATCGGCGATTACTACTACGGTCAGGGCCACCCAATGAAGCCGCACCGCATCCGCATGGCGCACAACCTTATCGTCCACTACTCCCTCCATCGCCGCATGGAGATTAACCGCCCTTTCCCAGCCTCCCCCAACGACATTCGCCGCTTTCACTCCGATGACTACGTTCACTTCCTCTCTTCCGTCTCTCCCGAGACCCTCGCGGACACCTCCTTCTCGCGTCAACTCAAGCGCTTCAACGTCGGCGAAGACTGTCCTGTCTTCGACGGCCTCTTCGACTTCTGTCAGGCTTCCGCTGGTGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCGGCGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCACCACGCCAAGAAATCCGAAGCCTCTGGATTCTGTTACGTCAACGACATTGTTCTCGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGAGTTCTGTATGTTGACATTGATGTTCACCATGGTGATGGGGTCGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTCTCTTTTCACAAGTTTGGTGATTTTTTCCCTGGCACAGGCCATATCAAAGACATTGGGGTGGGCTCGGGAAAGAATTATGCTGTCAATGTTCCATTAAACGACGGAATGGATGATGAAAATTTTCGTGGTCTGTTTCGAACGGTCATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAAGGTCACGCAGATTGCCTTCGATTCATTAGATCTTTCAATGTTCCATTAATGGTTTTGGGTGGTGGTGGATATACAATTCGGAATGTTGCCCGCTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTTGAGCCTGACAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGATCACACTGCTAGAACAGATTTCCCGACTTCCCCATACTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTAGAAATTCCAGAAGAGGCGGAAGAAGGCATGGATAGAAGACCAAAACTTCGCAAATGGGATGGCGAAGATTATGATTCTGACCCTGATGAAGGTGAAAAAGCTAATTCCAAGTTCTCAAGTGTCACTGCCCATATGAGGGATATTGCAGATGACATGGAAGAAGAGAAGCCAGGAGTGCATCCCTCATCTTGTTGTTGA 1428 0.4867 MGMMEEESSNSNTEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADTSFSRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDENFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFIRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHTPSVPFQTTPPTLEIPEEAEEGMDRRPKLRKWDGEDYDSDPDEGEKANSKFSSVTAHMRDIADDMEEEKPGVHPSSCC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01230 475 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Vian1g01230 475 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Vian1g01230 475 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Vian1g01230 475 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g01230 475 SUPERFAMILY Arginase/deacetylase 29 393 IPR023696 -
Vian1g01230 475 PIRSF HDAC_I_euk 7 471 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Vian1g01230 475 CDD HDAC_classI 34 341 - -
Vian1g01230 475 PANTHER HISTONE DEACETYLASE 2-RELATED 15 353 - -
Vian1g01230 475 Gene3D Histone deacetylase domain 27 402 IPR037138 -
Vian1g01230 475 FunFam Histone deacetylase 27 406 - -
Vian1g01230 475 MobiDBLite consensus disorder prediction 397 452 - -
Vian1g01230 475 MobiDBLite consensus disorder prediction 415 444 - -
Vian1g01230 475 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g01230 475 Pfam Histone deacetylase domain 48 339 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01230 Vian-Chr1 13275281 13278070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01230 K06067 - gmx:100807923 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01230 1 13275281 13278070 Vian1g01230 1 13275281 13278070 ECH