Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01221 ATGCGACCAACAGGAAGGGATCGAAGGATTGTCCGCAGAATGGCAAACTTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAGTGGAGGATGGTATAGGCTTTATAGGAAGAGGAAGAGGAAGAAGAAGAAATCAACATGCTAATTTTCCTCTGCAGCCTCAAGAACATGTTCCACAATCACTTGATCATGTAGTGGTTCAAGAGGAATGGAGTTTTCTTGAGAGTTTTGAGCAGCAATATGGCACTAAACACCCTTTCTTTTATGCTTGCCGTCTCGGGGAAGCCTTGAAATTAGCAGAACAAGATCACAAGTTCTTGTTCATGTTCCTCCACTCACCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACACTGTGTTCGGAGCCAGTGATTCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGAGGACTTGCATATAGAGGAGAGGGCTTGCAAATGGTTGCAACGCTTAGCCCTGACACTTTTCCCTGTTGTGCTGTCATAGCCCCCACTCCGGGCGAGAGTATAGCAGTTCTGCAACAGCTAGAAGGACCCCTTTCACCGGCTGAGCTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTAGCTTTCGGAAGTGCTAAAGCTAAGCAGGAAGAAAAGATTCGAGCAGACCGTAGGCTTAGAGAAGAACAGGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACTCAATAATTTACCTTCTAGAGAGGGAGTTCAGAAGCAAGTGGAAGCTCACAGCACCAAAAATTATGGGAAACTGATGAACAATTCTATGAATGTCACTAAACAGAACAGCAGAGTGAATGAGTCCACTAAGGGAGTTGCAAGTAAAGGAATCGAGTCTCAACCCACGCAGATTCTGATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATTGATTCCTTAGGATTGCCAGGGATTGGAAACTACAGATTGATATCAAACTTCCCAAGAAGAGCTTATGGTGTTGACCAAATGAGAATGACTCTCAAAGAGGCTGCCATGTATCCTAAGGCTAGTGTGTTCGTGGAGCCTTTAGGCGTTAGAGTCCCATAA 1149 0.443 MRPTGRDRRIVRRMANFPRSIMEGISRAVEDGIGFIGRGRGRRRNQHANFPLQPQEHVPQSLDHVVVQEEWSFLESFEQQYGTKHPFFYACRLGEALKLAEQDHKFLFMFLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLAYRGEGLQMVATLSPDTFPCCAVIAPTPGESIAVLQQLEGPLSPAELVGILQRTLEEQGVAFGSAKAKQEEKIRADRRLREEQDAAYLAALQIDKEKDKLNNLPSREGVQKQVEAHSTKNYGKLMNNSMNVTKQNSRVNESTKGVASKGIESQPTQILIRFPNGERREHTFLCTDKIQSIFSYIDSLGLPGIGNYRLISNFPRRAYGVDQMRMTLKEAAMYPKASVFVEPLGVRVP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01221 382 SMART ubx_3 293 376 IPR001012 GO:0005515
Vian1g01221 382 Gene3D Glutaredoxin 64 206 - -
Vian1g01221 382 Pfam UBX domain 298 376 IPR001012 GO:0005515
Vian1g01221 382 CDD UAS 93 203 - -
Vian1g01221 382 SMART 45neu3 72 198 IPR006577 -
Vian1g01221 382 CDD UBX 303 375 - -
Vian1g01221 382 Gene3D - 296 376 - -
Vian1g01221 382 SUPERFAMILY Thioredoxin-like 68 206 IPR036249 -
Vian1g01221 382 Coils Coil 211 231 - -
Vian1g01221 382 ProSiteProfiles UBX domain profile. 296 374 IPR001012 GO:0005515
Vian1g01221 382 PANTHER FAS-ASSOCIATED PROTEIN 8 375 - -
Vian1g01221 382 SUPERFAMILY Ubiquitin-like 297 377 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01221 Vian-Chr1 13123288 13125012 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01221 K18726 - gmx:100775212 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01221 1 13123288 13125012 Vian1g01221 1 13123288 13125012 ECH