Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01208 ATGGTGAACGCGAGTGACGCTGGCGTCGAAGCCCTACGGCGCCTGAAAGCGACGGATACACATTTATGGTTGGCGCCGAACGTGGAGCTGTCGGAAGCTGCTCGTACGGCGTCCCAATACTTGTTTTCTACCCTAAAACCATTTTCCCCTAAAACGCCATTGGATCAACTCCTCGTGGAAGGTTTCGACGCTGAACAGATATGGCAACAAATCGACCTCCAATCACAGCCTCTGTTATCCACCCTGCGCCGCCGATTGAAGCAGCTGGCTGAAAATCCTGAAGAGATTTCCCAGCTGAAGGTTCTTTCGGAAAGTGGGAACAAGGTGGAGGAAAAGAGTAGAGACGAGTGGGAGGGAGACAGTGACGGTTTTGACGAGGAGTTGGATGAGGAAGAGGAAGAGGAAGAGGAAGGAGACGAGGACGAAGAAGAGCAGGGAGAAGAAGAAGGAATGGAAGAGGATGAGGAAGATGAAGTGGGAGACGAAGAAGATAATGAAGAAGGCGGTGGCATTGAGGATAAATTCTTGAAAATAGATGAATTGGCGAAGTACTTAGATAAGGAGGAAGAGGATTTTCAGAATGCTGAGGCAGACAGAGAAGGCGAGGAGGAAGATGATGACGAGGAAAGTGATGAGGATGATGATTTTGGGTCTGGTGACGAAGATGATGTAGACGAAGAAGCAGAGGACATGGAAAATGCAAGGTATGAAGACTTCTTTGGAGGTAAAAAGGAAAGGGGCTCAAAAAGAAAAGCTCAAGTACTTCGGGAATCTAAATATTCTGAAGATGAGGGTGACATAGAATTTGACAATGAGAAAAAAAGGACTGCATCTGGCCACGAAAAGGAGCTGGAAAAAATTCAATCCAAGATAGAGCAGATGGAGAAAGCTAACATAGAGCCAAAAACATGGATTATGCAGGGTGAGGTAACTGCTGCAAAGAGACCCAAAAATAGTGCATTGGAAGTTGATCTAGACTTTGAGCACAATGTGAGGCCTACTCCTGTAATCACTGAGGAAGTTACAGCTTCTATTGAGGATATGATCAAGAATAGGATTATTGAGGGGTTTTTTAATGATGTGCAAAGGCTTCCTAAATTGCCATCTAAAGTGCCTCGGGAAGTTAAAGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAAATTTACGAGCAAGAATATGTTCAGAAGACAGACCCCACATCTGCTCCATTGTCATTCAAAGATGAACAAAAGAATGAGGCTACCATGCTGTTCAAGAGACTCTGTCTGAAGCTGGATGCCCTATCTCATTTTAACTTTGCCCCAAAACCTGTTATAGAGGACATGTCTATTCAAGTTAATGTGCCTGCTCTGGCAATGGAAGAAATTGCTCCTGTGGCTGTTTCAGATGCTGCTATGTTGGCTCCTGAGGAGGTGTTTGATGGCAAGGGTGATATCAAGGAAGAAGTAGAGCTTACACAGGCAGAAAGGAAGAGAAGGAGAGCTAACAAGAAAAGAAAATTCAAAGAAGAGGCAGTAAAAAAGACAAAAAAGAAGACGCAAGAAGGTGCAATTCATAGCCAAGTTAATGGGTAA 1581 0.4459 MVNASDAGVEALRRLKATDTHLWLAPNVELSEAARTASQYLFSTLKPFSPKTPLDQLLVEGFDAEQIWQQIDLQSQPLLSTLRRRLKQLAENPEEISQLKVLSESGNKVEEKSRDEWEGDSDGFDEELDEEEEEEEEGDEDEEEQGEEEGMEEDEEDEVGDEEDNEEGGGIEDKFLKIDELAKYLDKEEEDFQNAEADREGEEEDDDEESDEDDDFGSGDEDDVDEEAEDMENARYEDFFGGKKERGSKRKAQVLRESKYSEDEGDIEFDNEKKRTASGHEKELEKIQSKIEQMEKANIEPKTWIMQGEVTAAKRPKNSALEVDLDFEHNVRPTPVITEEVTASIEDMIKNRIIEGFFNDVQRLPKLPSKVPREVKELDDNKSKQGLAEIYEQEYVQKTDPTSAPLSFKDEQKNEATMLFKRLCLKLDALSHFNFAPKPVIEDMSIQVNVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDIKEEVELTQAERKRRRANKKRKFKEEAVKKTKKKTQEGAIHSQVNG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01208 526 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 6 516 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vian1g01208 526 MobiDBLite consensus disorder prediction 105 119 - -
Vian1g01208 526 Coils Coil 178 205 - -
Vian1g01208 526 MobiDBLite consensus disorder prediction 170 194 - -
Vian1g01208 526 Pfam Mpp10 protein 50 272 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vian1g01208 526 Pfam Mpp10 protein 262 511 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vian1g01208 526 MobiDBLite consensus disorder prediction 234 283 - -
Vian1g01208 526 Coils Coil 277 300 - -
Vian1g01208 526 MobiDBLite consensus disorder prediction 494 508 - -
Vian1g01208 526 MobiDBLite consensus disorder prediction 195 233 - -
Vian1g01208 526 MobiDBLite consensus disorder prediction 487 526 - -
Vian1g01208 526 PIRSF snoRNP_Mpp10 9 266 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vian1g01208 526 PIRSF snoRNP_Mpp10 194 524 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vian1g01208 526 MobiDBLite consensus disorder prediction 120 169 - -
Vian1g01208 526 Coils Coil 114 144 - -
Vian1g01208 526 MobiDBLite consensus disorder prediction 101 283 - -
Vian1g01208 526 Coils Coil 487 514 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01208 K14559 - gmx:100781093 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01208 1 12992111 12999124 Vian1g01208 1 12992111 12999124 ECH