Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01171 ATGGGAACGACAACAACTCCTCTTTCGCACACAGTTAGCGTCTTCAACATTCCTCGCTCCGCCACCGCCAAGGACCTTCTCCACTTCCTCGAATCCAAGGTGGGTACTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACGCCAACTGGAAGTCCCGCGGCGCCGGCCGCGTCCAGTTCGAGACCCTCGACGCTAAGTCCCGCGCCCTATCTCTCTCCAACCTTCAACAACTGCTCATCCACTCCCACTTCCTCCGCCTCTCCGATACCTCCGAAGACATCATCTTCCGCCCCCTCCACCGCCTTCAAAATGGTGTCCTCTACGCCGGCATCATGCTCTCCGACCACCGCATGAGCGTTCTCGACTCCTGGGAGGGCGTTGCGGGGTTGGTAGTGGCCCAAAGGAGGAGGCTTGACTTCTTGGTGTGGCATGATGGCGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGTGTCATGGCTATTGTTTGGGAGAAGAAGCCAAACTCAATGCCATTCTCTTGAAGCTTAAATTTGGGCCAAGGATTTACAAGAAAAAGACGGGGCCAGATGTGGCAACCAAGTTTAAGAGTGATAGGTACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGGACGACTGACTTTTCGGCTCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGAGGAAGAACATTTGGCTTCGGATGTTTTTACAAGTTTCCCGCTCTACAAGGAAAATATGACAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACGGAAGCAGTTCCTCTTGTAAAGTGTGCGTCGCAATCCAAGTTACCTTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACCTTTTGGGAGGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAGATGGGCTTCACTTGTTATGAGCCTCTTAAATTCGTGAAGACTCAGTTGCATGTGCTGAGTAATAAGAAAAAAAGTCCACCACAATCTTCACAGAAAAGATTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAGATTTATTGCCTTGGTCCTGAGCTTGAAACGTCAAACCATGTGGTAAAGCATTTTGCATCCTATGCTTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCAGTATCGACTGGTGTGCAAAAGGGAATATTTTCAAAGCCTTCTAAAACTGAAATATATAATCGAATATTGACTATTCTTCGAGATGGGATTGTTATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATTTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGTCCCCTCAAGATGTTGAGATAATTCCAGATATTGAAGTTACCACTGATGGTGTAAGCTATTGTTTCTCAGATGGTATCGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTCAAGTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATTTAAAGGTGTCATTACTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGCAGAAGCATGCTGAAGTTTGAATCCAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGACTACCTTAGGAGTAAAGGACGAAGTGTTTTTGGCAAGGCAACAGGACCAATTGAATTTGTTGGGAAGGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAACGGAGCTGATTCAAGGAGCATTTTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCTATGATGCTTAAGGCTTACTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAGTAGGTTGCTTGGATGAAACTGGTATCTTGAATTATGGTCAAGTATTTGTTCGTGTAACGGTGAAAAAAACTACGGAAAACTTTGATGACAACTTAAGGAAAGTGGATGACGATGATAGCACACGTATAGTAGTGGGAAAGGTGGTGGTCACGAAAAATCCTTGTCTTCACCCTGGAGACGTAAGAGTCCTTGATGCTATCTACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAACGGACATAGGCCCCATCCAAATGAATGCTCTGGAGGTGATCTCGATGGAGATTTGTTTTTCGTAAGCTGGGACAAAGATCTAATACCATGTCAAACCGAGGCTCCAATGGACTACACAGGACGTAGTCCTCGTATAATGGATCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCGCATCTAGTTCACGCTGATCGTGAACCAGATAAAGCCAAGAGTAGAAAATGTCTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGATTTTGCAAAGACCGGAGCACCTGCTGCAATGCCAAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTGGACAAGCCTATGTACATCTCCAAGGGGGTACTAGGAAAACTTTATCGTGCTATAATTGAGTCTCAACTGCAAATAAAATATAGTTTTGTTTGGTCACAGAAGCTTGCTGAAGAAGCATATGATCGCAGCTTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCAAAAAGAAATGTACGCAGAGAAGATGAGCAGTTTGATGAACTTCTACGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGTGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCACGAATATCGTCCTATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCAAGAAAGATCGTGTTTTCTTAGCTTCCCATGGATAGTTGGTGAGATTTTGTTGCAGATAAAGTCTACAAATAAAGTAGTTCAAGGATGA 3360 0.4333 MGTTTTPLSHTVSVFNIPRSATAKDLLHFLESKVGTSTVFALEIFSDNANWKSRGAGRVQFETLDAKSRALSLSNLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGIMLSDHRMSVLDSWEGVAGLVVAQRRRLDFLVWHDGDCYRLEIFFEDILECHGYCLGEEAKLNAILLKLKFGPRIYKKKTGPDVATKFKSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIEEEHLASDVFTSFPLYKENMTDLALEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEEIRAVIFQKLHQMGFTCYEPLKFVKTQLHVLSNKKKSPPQSSQKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPSKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVSPQDVEIIPDIEVTTDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGFKGVITVDRHSFRKLSLRRSMLKFESKNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVFLARQQDQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGILNYGQVFVRVTVKKTTENFDDNLRKVDDDDSTRIVVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFVSWDKDLIPCQTEAPMDYTGRSPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQLQIKYSFVWSQKLAEEAYDRSFEVNGFEAFLETASSQKEMYAEKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQCEAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQERSCFLSFPWIVGEILLQIKSTNKVVQG 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01171 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Vian1g01171 1119 Gene3D - 2 84 IPR012677 -
Vian1g01171 1119 SUPERFAMILY RNA-binding domain, RBD 7 77 IPR035979 GO:0003676
Vian1g01171 1119 CDD RRM_SF 12 70 - -
Vian1g01171 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Vian1g01171 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1111 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01171 Vian-Chr1 12554004 12558180 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01171 K11699 - gmx:100808274 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01171 1 12554004 12558180 Vian1g01171 1 12554004 12558180 ECH