Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01166 ATGGGAGGTAACAAACGTAAGAGACCACACAAATCCAAAACCTCCGCCCCGGAAACCCTAGACCACCCCACCCCCGCTCCCTCCCCTGCCCCCGTCACCGCCACTGCCACCGCCGTTGCCGCTCCTAACTCTGCCGCCAACACTGCCTCAATGGAGGACGTCTTTTCCGTTAGCAATGTCGAGCTCATCGACAACACCGTCTCTCCCCGCGTTCGCCGCCACCGTGGCCGCCCCAAGAAGGTCCCCGTCCACTCCGACAAACCCCTATCTCTTGCGACGGGGCGCCGCCTTTCCCGTCCACTCGACAAAGGCGACGGAGACTTCTCGGTTCCCGGCGACGCTGGGATGTCCACCTTGGTGGCGATGGAGGTGGACAAGGGGTGGGAGGCGCGGGTGTTGCCGGCTATGGACTCCGTGGTGAAGGTGTTTTGTGTCCACACGGAACCGAATTTCTCGCTGCCGTGGCAGCGGAAGAGACAGTACAGCTCGAGTAGTAGCGGGTTTGTGATTGGCGGGAGAAGGGTTCTGACGAATGCGCATTCGGTGGAACACTACACACAGGTCAAGCTCAAGAAGCGTGGCTCTGATACCAAGTACTTGGCCACTGTGCTTGCCATTGGAACCGAATGTGACATTGCCATGCTTACAGTGGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGGAGTTGCCTGCACTTCAAGATGCGGTAACTGTTGTGGGCTACCCAATTGGTGGAGATACTATCTCGGTGACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTTCATGGTTCTACAGAGCTTTTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGAGGACCTGCATTTAATGATAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTTAAGCACGAAGATGCGGAGAATATAGGTTATGTCATTCCAACACCAGTTATCATGCATTTCATCCGGGATTACGAGAAGAATGGAGGCTACACTGGGTTCCCTATTCTAGGGGTTGAGTGGCAGAAAATGGAAAACCCTGATCTGCGAATGGCAACAGGCATGAGACCTGACCAGAAAGGTGTGCGCATCAGAAGAATTGATCCTACTGCTCCAGAATCCAAGGTTTTGAAGCCATCAGATGTTATCCTTAGTTTTGATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGACATGGAGAGCGCATTGGCTTCAGTTATCTCATCTCACAGAAATATACCGGGGATAATGCAGCAATTAAAGTACTGCGAAATGCAAACATCTTAAAATTTGACATTAAACTTGAGACTCACAGAAGGCTTATTCCATCACATAGCAAGGGCAAGCCTCCCTCGTATTATATAATTGCTGGATTTGTTTTTACAACTGTTTCGGTTCCATATCTTCGTTCTGAGTATGGAAAAGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAATTGCTGCATTCAATGCCACAATCACCAGATGAACAACTTGTTGTGGTCTCTCAGGTGCTCGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACATCCAGGTCCTTGGTTTCAATGGTAAACCAGTGAAAAACCTGAAGAGCCTGGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTCGATCTAGATTATGATCAGATAGTGGTCCTTCGCACAAAGACTGCAAAAGCAACTACCCTTGATATTCTTGCAACACACTGTATTCCATCAGCGATGTCTGATGATCTTAAGTCATGA 1800 0.4839 MGGNKRKRPHKSKTSAPETLDHPTPAPSPAPVTATATAVAAPNSAANTASMEDVFSVSNVELIDNTVSPRVRRHRGRPKKVPVHSDKPLSLATGRRLSRPLDKGDGDFSVPGDAGMSTLVAMEVDKGWEARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVIMHFIRDYEKNGGYTGFPILGVEWQKMENPDLRMATGMRPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIKVLRNANILKFDIKLETHRRLIPSHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNIQVLGFNGKPVKNLKSLATMVESCNDEYLKFDLDYDQIVVLRTKTAKATTLDILATHCIPSAMSDDLKS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01166 599 MobiDBLite consensus disorder prediction 68 91 - -
Vian1g01166 599 Gene3D - 337 449 IPR036034 GO:0005515
Vian1g01166 599 FunFam Protease Do-like 9 119 222 - -
Vian1g01166 599 Pfam PDZ domain 451 596 IPR041517 -
Vian1g01166 599 Pfam Trypsin-like peptidase domain 166 303 - -
Vian1g01166 599 CDD PDZ_serine_protease 342 442 - -
Vian1g01166 599 Gene3D - 223 334 IPR043504 -
Vian1g01166 599 Pfam PDZ domain 343 444 IPR001478 GO:0005515
Vian1g01166 599 Gene3D - 450 599 IPR046449 -
Vian1g01166 599 SUPERFAMILY Trypsin-like serine proteases 134 336 IPR009003 -
Vian1g01166 599 PANTHER - 76 597 - -
Vian1g01166 599 PRINTS HtrA/DegQ protease family signature 195 215 IPR001940 GO:0004252|GO:0006508
Vian1g01166 599 PRINTS HtrA/DegQ protease family signature 274 291 IPR001940 GO:0004252|GO:0006508
Vian1g01166 599 PRINTS HtrA/DegQ protease family signature 167 179 IPR001940 GO:0004252|GO:0006508
Vian1g01166 599 PRINTS HtrA/DegQ protease family signature 237 261 IPR001940 GO:0004252|GO:0006508
Vian1g01166 599 PRINTS HtrA/DegQ protease family signature 383 395 IPR001940 GO:0004252|GO:0006508
Vian1g01166 599 FunFam protease Do-like 9 224 334 - -
Vian1g01166 599 SUPERFAMILY PDZ domain-like 367 449 IPR036034 GO:0005515
Vian1g01166 599 Gene3D - 121 222 IPR043504 -
Vian1g01166 599 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01166 Vian-Chr1 12519151 12524629 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01166 K25897 - gmx:100817187 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01166 1 12519151 12524629 Vian1g01166 1 12519151 12524629 ECH