Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01165 ATGGCAGCAACAGCTTCGAGGTTCATCAAGTGTGTCACAGTTGGGGATGGAGCTGTAGGCAAAACTAGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATGTTCCAACAGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGATACTGCAGGTCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCCTGGCTTTCTCTTTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGCATCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGATAAGCACTATTTGGCTGAGCATCCTGGCCTGGTGGCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTAGTAGGAGCTACATATTATATTGAGTGCAGCTCAAAAACTCAGCAGAACGTGAAGTCAGTTTTTGATGCAGCTATCAAGGTGGTCATCAAGCCTCCACAAAAACAAGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTTCTGTTAGTAGACTTTTTTCATATCATAATAACTCCTGCACGTCAAACTTTCTTTCTTGTGAAAAGGGATATAGATCATTAA 672 0.442 MAATASRFIKCVTVGDGAVGKTSMLICYTSNKFPTDYVPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGIPVVLVGTKLDLREDKHYLAEHPGLVAVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQEKKKKPRRGCLLLVDFFHIIITPARQTFFLVKRDIDH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01165 223 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Vian1g01165 223 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Vian1g01165 223 CDD Rop_like 8 180 - -
Vian1g01165 223 PRINTS Transforming protein P21 ras signature 9 30 - -
Vian1g01165 223 PRINTS Transforming protein P21 ras signature 32 48 - -
Vian1g01165 223 PRINTS Transforming protein P21 ras signature 49 71 - -
Vian1g01165 223 PRINTS Transforming protein P21 ras signature 111 124 - -
Vian1g01165 223 PRINTS Transforming protein P21 ras signature 157 179 - -
Vian1g01165 223 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Vian1g01165 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Vian1g01165 223 Gene3D - 2 199 IPR027417 -
Vian1g01165 223 ProSiteProfiles small GTPase Ras family profile. 4 198 IPR001806 GO:0003924|GO:0005525
Vian1g01165 223 PANTHER RHO FAMILY GTPASE 6 197 IPR003578 GO:0005525|GO:0007264
Vian1g01165 223 SMART ras_sub_4 6 182 - -
Vian1g01165 223 SMART rab_sub_5 9 182 - -
Vian1g01165 223 ProSiteProfiles small GTPase Rab1 family profile. 4 223 - -
Vian1g01165 223 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Vian1g01165 223 FunFam Rac-like GTP-binding protein 3 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01165 Vian-Chr1 12509168 12511414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01165 9 182 EF-hand Containing Proteins AT5G27540 26.437 1.44e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01165 K04392 - gmx:100791566 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01165 1 12509168 12511414 Vian1g01165 1 12509168 12511414 ECH