Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00902 ATGAGGTTAGACTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGCTATTGCACATCTGGCTTAAACAGCCATTAGTAGATGTGGCAGAAATTAATTCTAGGTTGGACATAGTACAAGCATTTGTAGAGGACACTGTGCTTCGGCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAACGACTGATGCACAATCTGCAGAAGCGACGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCAAGTATTCGACTACCTTTCATTAAAAGAGCTTTAGAAATATATGATGGGCAGTTTTCCTCAGTGATGAGGAGTAGGTATTTGGAACCTCTTCAGTTATGGACTGATGATGAGCACTTGAACAAATTCATTGGGCTTGTAGAAGTTTCTGTTGACCTTGATCAACTGGAGAACAGGGAATACATGATTTCTCCAAGCTATGACTCTACACTAGCTAACCTAAAGGAACAACGAGAATTACTAGAGAGCCAAATACATAACTTGCATAGACAAACTGCTGATGATCTTGATCTGCCTATAGATAAGGCATTAAAGTTAGACAAAGGGACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAGATAAGGAAGAAGCTCAATACCCAGTTTATTGTATTGGAAACCCGGAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAAAAGCTAGGGGATAAGTATCAACAAATTCTTGAGGAGTATAAAAATTGTCAAAAGAAGTTAGTGGATAAGGTAGTTCAAACAGCGACAACCTTTTCTCAGGTGTTTGAATCTTTGGCCGAAATAATCTCTGAATTGGATGTATTACTGAGTTTTGCTGATCTAGCTTCTAGTTGCCCTACTCCCTACACAAGGCCTGATATCACTCCAGCGGATGAAGGAGATATTATCTTAGAAGGCTGCAGACACCCTTGTGTGGAAGCCCAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGAAAAAACTTGGTTTCAAATAATAACGGGGCCTAACATGGGTGGTAAATCAACATTCATCCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCATTTGTTCCTTGTGACAAAGCCAGCATATCTGTTCGTGATTGTATTTTTGCCCGTGTGGGTGCTGGTGACTGCCAACTACGTGGTGTTTCTACCTTCATGCAAGAGATGCTTGAAACTGCATCAATATTAAAAGGAGCAACTGAAAAGTCTTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTTATCAAAGCTCCTACTTTGTTTGCCACCCACTTTCACGAGCTGACTGCTTTAGCCCTTGAAAATGTAAGCAACGATCCACAGAAGCAAATTGTTGGCGTGGCAAACTATCATGTTAGTGCGCATATTGACTCATCAACTCGAAAGCTAACTATGCTATATAAGGTTGAACCTGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCCGAGTTTGCTAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCGGCAGAATTAGAAGACTTTTCTCCCCCTGCAGCATCCCTAACTGATACTACACAGGAGGTGGGTTCTAAACGTAAGAGAGTTTTTGAATCCGATGACATGTCTCGAGGGAGTGCAAGGGCACGGCAATTTCTCGAAACATTTGTTGCTTTGCCACTGGTGTCCATGGACAAAATGCAAGCGTTGCAAGAAGTAAGGAAGTTAACAGAAAGTTTGGAGAAGGATGCTGAACACTGTAATTGGCTGAAGCAATTCTTGTAG 1947 0.4119 MRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVAEINSRLDIVQAFVEDTVLRQDLRQHLKRISDIERLMHNLQKRRAGLQHIVKLYQSSIRLPFIKRALEIYDGQFSSVMRSRYLEPLQLWTDDEHLNKFIGLVEVSVDLDQLENREYMISPSYDSTLANLKEQRELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKNCQKKLVDKVVQTATTFSQVFESLAEIISELDVLLSFADLASSCPTPYTRPDITPADEGDIILEGCRHPCVEAQDWVNFIPNDCKLVREKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNDPQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPPAASLTDTTQEVGSKRKRVFESDDMSRGSARARQFLETFVALPLVSMDKMQALQEVRKLTESLEKDAEHCNWLKQFL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00902 648 Coils Coil 77 97 - -
Vian1g00902 648 Pfam MutS domain V 369 567 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 Gene3D - 324 645 IPR027417 -
Vian1g00902 648 SMART mutATP5 366 564 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 1 570 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vian1g00902 648 FunFam DNA mismatch repair protein MSH2 324 644 - -
Vian1g00902 648 CDD ABC_MSH2_euk 337 567 IPR032642 GO:0005524
Vian1g00902 648 Gene3D - 230 323 - -
Vian1g00902 648 Gene3D - 1 229 - -
Vian1g00902 648 SUPERFAMILY DNA repair protein MutS, domain III 4 318 IPR036187 -
Vian1g00902 648 Coils Coil 260 280 - -
Vian1g00902 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 568 IPR027417 -
Vian1g00902 648 FunFam DNA mismatch repair protein 1 218 - -
Vian1g00902 648 PIRSF MSH2 1 648 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 Coils Coil 180 200 - -
Vian1g00902 648 FunFam DNA mismatch repair protein MSH2 220 323 - -
Vian1g00902 648 Pfam MutS domain III 7 313 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 ProSitePatterns DNA mismatch repair proteins mutS family signature. 447 463 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 MobiDBLite consensus disorder prediction 573 594 - -
Vian1g00902 648 Pfam MutS family domain IV 176 273 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vian1g00902 648 SMART DNAend 21 349 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00902 Vian-Chr1 9442516 9448227 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00902 K08735 - gmx:100792272 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00902 1 9442516 9448227 Vian1g00902 1 9442516 9448227 ECH