Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00888 ATGCTACAAAGAGTAGTGCGATACTCCGCCCAACCATTCAATCCTCCAACTCGCACGACACCACCATCACTTTCGCCAATTCAATTAATACCCACTTCTCCCTCTTTCCCAATCCTCAAACAGCAATGCAGATTATCACGTAGAGAGCTCACAATCTTCAGCAACTCTTGCTTGCTACTTCTCTTGGGTACTCAGGCAGTGGATGGATCCAGCGCAAGAGCAGAAGCAGCAGTTGCAAACACAAACAACAGTGATCAACCAGAAGGGAATGTGGTTTTTGTAGAAGAGCATGCTGCTAACACAAGCAGCACTGCTCAACCAGAAGAGAATCGTGATTTAGCAGAAGATGTTGCTAACACAAGTAACACTGCTCAACCAGAAGAGAATCGTGTTTTAGCAGAAGATGTTGCTAACCAGCAGGCAGAAAATTTGAATTTAGCAGAAGAAAATGTTACTAAAACAAGCAACAGTGACCAACCAGAAGACAATCTGACTACCACTCCTAGCTGCACCGAAAGAAAAACTACCAAACAAGTATTTTTAGACATATCTATTGATGGCGAACCTGCTGGTCGCATTACCATAGGACTTTATGGAGATGAGGTCCCTGCAGGAGTGGACAGGTTTAGTAAGATTGCGAGTGGAGTCGCTGGTATTAGCTACAGAAGAAAAGAGTTTGTCAAAATCATGCCCAATTATGTTCAACATAGCGGCCTTAGATCCTATGGGGTGGATGCTGAATTTTCTTCGAAGACAGGTAGCAACTTGGGAGTTAATAGTCTGGTTCAGGAATGGGAGAGGGAGTATGATAAATGTCCTGGGACTAAAAACGTGACTGGAAGTGTTGGCATTATTGTGAGAAACCCGTCAAAACCACCCCCAAAGATGAAGCTGGTTGCAAAGAAAGGGAAGCTTGAGATTGATCAAGAAGAAGTAGGTATTGATCCCAATGGTACAGAATTTGTCATAGTTACAAAGGACTCACCAGAATTGGATACATCGTCTCTGGTAATTGGAAGAGTGATAGGAGGCATGGAGGTTGTGCAGAGGATCGGTCAGGTTCAAACGGTACAGGAGAATACGGGATCTCCATATTTTAGGGTGGCAAAGCTGATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCTAAGGTCATTGTTACAAACTGTGGTTTGATGCAGTAA 1203 0.4381 MLQRVVRYSAQPFNPPTRTTPPSLSPIQLIPTSPSFPILKQQCRLSRRELTIFSNSCLLLLLGTQAVDGSSARAEAAVANTNNSDQPEGNVVFVEEHAANTSSTAQPEENRDLAEDVANTSNTAQPEENRVLAEDVANQQAENLNLAEENVTKTSNSDQPEDNLTTTPSCTERKTTKQVFLDISIDGEPAGRITIGLYGDEVPAGVDRFSKIASGVAGISYRRKEFVKIMPNYVQHSGLRSYGVDAEFSSKTGSNLGVNSLVQEWEREYDKCPGTKNVTGSVGIIVRNPSKPPPKMKLVAKKGKLEIDQEEVGIDPNGTEFVIVTKDSPELDTSSLVIGRVIGGMEVVQRIGQVQTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLMQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00888 400 FunFam Peptidyl-prolyl cis-trans isomerase B 169 400 - -
Vian1g00888 400 Coils Coil 129 149 - -
Vian1g00888 400 MobiDBLite consensus disorder prediction 146 171 - -
Vian1g00888 400 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 5 400 IPR044185 -
Vian1g00888 400 SUPERFAMILY Cyclophilin-like 174 399 IPR029000 -
Vian1g00888 400 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 181 359 IPR002130 GO:0000413|GO:0003755
Vian1g00888 400 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 180 398 IPR002130 GO:0000413|GO:0003755
Vian1g00888 400 Gene3D - 167 400 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00888 Vian-Chr1 9246470 9247827 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00888 K03768 - gmx:100800469 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00888 1 9246470 9247827 Vian1g00888 1 9246470 9247827 ECH