LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g00840	ATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGAAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCTCCGAACTTGGTGCACAGGTTTTATCAGGATTCAAGTTTCTTAACCAGATCGGACAACAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCACGAGAAGATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTTACTGGGTGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTTTGTCTTAAATGATGTCTTTAGGTACATTGAGGTGAATGATGCACCGCAGTTAAATTCTGCCTCAGTAAATGTCATCAGTGAAAATGCTGAGACAGTGCATGAGCCAGAATCAGAGGAAACACATGCTCCCAAAATTCTTGTGGAAGACACTGCAACTTCATCAGTGGCAGAGGATGAAAACCATAATAATGGCAGTGAAGTCTATCATCCTCAGGATGAAGAAGAAGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACCGACTTAAGTCAGAATGAAATTGTTACGGTTCAAGATTCAACTTCTGCTGCTCAGGATGATGCACCAAGGAGATCATATGCATCCATTGTAATGAAAAGTAATGTAGCATCTGGCCATGTCTACGTTCCCAGCCGAGCTGCTAGAGTGGCATCTGCTAAATCCAGTGAACAATGGTCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTGGTGATAGTGCACCTGAGAGTAGTGACCTTCATGAAGAAGTTGAAGGTCACTCCATATATATACGAAACTTGCCATTTAGTGCAACAGTTGAGCAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGTATCCAAGTCAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCTCTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAAAGAACTACTACACGAGTAAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAGTTTGGTGGTGGACGAGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGAAATCGTAATTCTACACCATCATCTTCAGCAGCATGA	1392	0.4361	MAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTTVQEIHEKIISLNYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASVNVISENAETVHEPESEETHAPKILVEDTATSSVAEDENHNNGSEVYHPQDEEEGSVIDEEVAEPPTDLSQNEIVTVQDSTSAAQDDAPRRSYASIVMKSNVASGHVYVPSRAARVASAKSSEQWSTTAKSTPVPESFAPIGDSAPESSDLHEEVEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMQSALEASPISVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g00840	463	SUPERFAMILY	RNA-binding domain, RBD	300	408	IPR035979	GO:0003676
	Vian1g00840	463	ProSiteProfiles	Nuclear transport factor 2 domain profile.	17	133	IPR018222	-
	Vian1g00840	463	MobiDBLite	consensus disorder prediction	423	442	-	-
	Vian1g00840	463	MobiDBLite	consensus disorder prediction	377	463	-	-
	Vian1g00840	463	MobiDBLite	consensus disorder prediction	270	297	-	-
	Vian1g00840	463	Pfam	Nuclear transport factor 2 (NTF2) domain	17	133	IPR002075	-
	Vian1g00840	463	MobiDBLite	consensus disorder prediction	177	235	-	-
	Vian1g00840	463	SUPERFAMILY	NTF2-like	13	134	IPR032710	-
	Vian1g00840	463	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	304	380	IPR000504	GO:0003723
	Vian1g00840	463	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	13	433	IPR039539	-
	Vian1g00840	463	SMART	rrm1_1	305	376	IPR000504	GO:0003723
	Vian1g00840	463	FunFam	Ras GTPase-activating protein-binding protein 1	292	419	-	-
	Vian1g00840	463	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	306	363	IPR000504	GO:0003723
	Vian1g00840	463	Gene3D	-	6	137	-	-
	Vian1g00840	463	Gene3D	-	296	385	IPR012677	-
	Vian1g00840	463	FunFam	Nuclear transport factor 2 family protein	8	137	-	-
	Vian1g00840	463	MobiDBLite	consensus disorder prediction	215	234	-	-
	Vian1g00840	463	CDD	NTF2	13	135	IPR018222	-
	Vian1g00840	463	CDD	RRM_SF	306	363	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g00840	Vian-Chr1	8717607	8722994	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g00840	K24983		-	gmx:100801253	745.347

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g00840	1	8717607	8722994	Vian1g00840	1	8717607	8722994	ECH