Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00837 ATGCCATTCTCTTCGTTTATTTTCTTCTCTTCAGATGTGTGTTTTTTAACAGGTTTTGCTCCTTTTGTGTTTCTATTTCTTGTTATTGGGTGCACTGCAAGGCCTTTTTATCCTCTTCCCAACAAAGTTGATGGGGGAAGTAGGAAGCCCCTACAAACTTTTCGCCCATATAACATTGCACATCGCGGTTCAAATGGAGAGTTTCCTGAAGAAACTTCTGCTGCGTATACGAAAGCTATTGAAGAAGGTGCAGACTTCATTGAAGCTGATATCTTATCATCCAAAGATGGTGTTCTTATATGTTTCCATGATTTCTACCTTGATAATATTACTGACATCGCAAGTCACAAGGAGTTTGCTGATCGTAAAAGAACGTATGAAGTCCAAGGGGAAAACTCCACTGGGTTCTTCACTGTTGATTTCACATTGAAGGAGTTAAAGTCATTGAGGGTGAGACAGAGGTTTGAAAACAGGGATCAACAGTTTAATGGAAAGTTTCAAATCATCACTTTTGAAGAGTTCATTAACATAGCACTGGATGCACCCAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAACATGTTAAATGGTCAGATGGCAAAAGATTTGAAGACAAGTTTGTGGAGACACTTCAGAAATATGGGTTAAAGGGTTCCTACCTGTCAAAAAATTGGCGGAGACAACCTGTATTCATTCAGTCATTTGCTCCAACTTCACTCGTGTATATAGCAAATAAGACGGATTTGCCCAAAATTTTCTTAATTAACGAAGTTGTTATTCCAACGGAGGACACCAATCAGTCATACTGGGAGATTACATCTGATGAATACCTAAACTACATAAAACAATATGTTGTGGGAATTGGACCATGGAAGAACACGTTGGTACCTGTGTTAAATAATTATACGGAAACTCCTACTGATCTTGTCTCCAGGGCACATGCTCATAATCTGCAGGTGCATCCATATACTTACCGAAACGAGAACTGTTTTTTGCCCTTCAACTTTAGTCAAGATCCGTATGTGGAGTATGATTACTGGATCAACAAGATAGGTGTTGATGGTCTGTTTACAGACTTTACTGGTAGCCTCCATCGTTTTCAGGAATGGACCTCTAAACATCAAGATGATGATGATGATGATGAAGATGAAGATGCATCCAGGCTATTGCATAAAATTGCATTGTTGCTCTCCTCTTATAATTGA 1224 0.3856 MPFSSFIFFSSDVCFLTGFAPFVFLFLVIGCTARPFYPLPNKVDGGSRKPLQTFRPYNIAHRGSNGEFPEETSAAYTKAIEEGADFIEADILSSKDGVLICFHDFYLDNITDIASHKEFADRKRTYEVQGENSTGFFTVDFTLKELKSLRVRQRFENRDQQFNGKFQIITFEEFINIALDAPRVVGIYPEIKNPVFINQHVKWSDGKRFEDKFVETLQKYGLKGSYLSKNWRRQPVFIQSFAPTSLVYIANKTDLPKIFLINEVVIPTEDTNQSYWEITSDEYLNYIKQYVVGIGPWKNTLVPVLNNYTETPTDLVSRAHAHNLQVHPYTYRNENCFLPFNFSQDPYVEYDYWINKIGVDGLFTDFTGSLHRFQEWTSKHQDDDDDDEDEDASRLLHKIALLLSSYN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00837 407 CDD GDPD_ScGlpQ1_like 56 367 - -
Vian1g00837 407 Gene3D Phosphatidylinositol (PI) phosphodiesterase 54 373 IPR017946 GO:0006629|GO:0008081
Vian1g00837 407 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 52 383 - -
Vian1g00837 407 FunFam Glycerophosphodiester phosphodiesterase GDPD5 54 373 - -
Vian1g00837 407 Pfam Glycerophosphoryl diester phosphodiesterase family 61 368 IPR030395 GO:0006629|GO:0008081
Vian1g00837 407 ProSiteProfiles GP-PDE domain profile. 56 374 IPR030395 GO:0006629|GO:0008081
Vian1g00837 407 SUPERFAMILY PLC-like phosphodiesterases 56 372 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00837 Vian-Chr1 8697831 8701084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00837 15 406 Acyl Lipid Metabolism Gene Families AT1G74210 69.975 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00837 K01126 - gmx:100778145 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00837 1 8697831 8701084 Vian1g00837 1 8697831 8701084 ECH