Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00833 ATGGCCTACACCGAGACAACCTCGGACTCCACCTGGGACAAATTCCTCGGTGCCCTTTTGAACTCTCTGGCTTTCGTCGTCCTCGTCACCTTCGCAACCTTCATCCTGGTTCTCCTCTTTTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGCTGGGGTTCCTCGGCGGTGAAGTCTCGCTGTTCTTGATCCAACAGTTTAACACCCCCGTTGATTGCATTACGTTTTTCCTCTTGCTATGTAATTTCGCCGTTGTGGGTGTTTTGACCGTGTTTATGTCAAAAATGGCAATTTTTGTGACCCAGGGGTATTTGGTTGTTATTGGGATATTGATTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACCTGGGCCTTGCTTGTTGCTATGGCGCTGTATGATGTTGCCGCAGTTTTGTTACCAATTGGGCCGTTGAGGCTTTTGGTGGAGCTTGCAATATCAAGGGATGAGGAAATTCCCGCGTTGGTTTATGAGGCTAGACCAGTGAACCATGGTAATTTGAGTCCCAGGGATCTTGTGCAGAGGAGGCGGTTATGGAGAGAAAGGAGGGTTGATAATTCAAATCTTCAAACTGATTCCAACTCAGCGTTGGGTCATGGATCCAGTGTTGAATTTCCCTCCGGTTCTGACGGAAGCCCCAGCAATAACTTAAACATGGTTAGGGAGAATGCCTCTAGAAATGCAATTCTAACAGCTAATAGTTCTGGTGGCTCTTATGGTTGCATAAGTTTGGTGAATGCAGAAGAGGAACCAGTGCGCCTTCATGAGACTGATTCAGACCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTCCAGCACGGTAGGGGGGAAGATGCTGTGCCAAGTGAGAATTTGATGCTAGAAGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTACAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTATATGCATGTTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATCCTTTTGGCTTTATATCAGAAGGCTCTGCCTGCTCTTCCTGTGTCAATAGGACTGGGTGTGTTGTTTTATTTCTTGACAAGGCTCCTACTTGAAGTATTTGTAGTACAATGTTCTATAAATCTCTTGTTGTTCTAA 1203 0.4547 MAYTETTSDSTWDKFLGALLNSLAFVVLVTFATFILVLLFYFRCTRFLKLYMAFSTFIVLGFLGGEVSLFLIQQFNTPVDCITFFLLLCNFAVVGVLTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGNLSPRDLVQRRRLWRERRVDNSNLQTDSNSALGHGSSVEFPSGSDGSPSNNLNMVRENASRNAILTANSSGGSYGCISLVNAEEEPVRLHETDSDLSAPLIDRGMNVQHGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIGLGVLFYFLTRLLLEVFVVQCSINLLLF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00833 400 MobiDBLite consensus disorder prediction 205 234 - -
Vian1g00833 400 Gene3D Presenilin 308 392 IPR042524 -
Vian1g00833 400 FunFam Presenilin 290 391 - -
Vian1g00833 400 Pfam Presenilin 3 390 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vian1g00833 400 PANTHER PRESENILIN 2 400 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vian1g00833 400 SMART psh_8 16 386 IPR006639 GO:0004190|GO:0016020
Vian1g00833 400 PRINTS Presenilin family signature 126 133 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vian1g00833 400 PRINTS Presenilin family signature 143 160 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00833 Vian-Chr1 8673531 8674733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00833 14 400 Miscellaneous Gene Families AT2G29900 59.432 2.92e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00833 K04505 - gmx:100780823 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00833 1 8673531 8674733 Vian1g00833 1 8673531 8674733 ECH