Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00814 ATGTCAGGTGCAAAGAAATCTCATTTGAAGGATGCTAAACCTAGTTCTGTTGAATCTTGGACTAATCCATTTGATTCTGACGATGAGGAGAAGAATACCAAAAAGTATTCTTCTTCCAGAAAGACTTCTTCGGATCGCGCACTAGTTACGCTGGAAGTTAACACTAACCCCTTTAACGATGACATTGATGCCACTAAGAAATCATCATTGACATCGTATGCGTACAAGAATGATTTTTGCGATTCAGGCGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTTTACAAGGCGGAAGAGACCACAAATTCAGTCAACAATTGTTTGAAGATTGCAGAGAATATAAGAGAGGATGCCACCAAAACACTAGTCACCCTTCATCAACAGGGTGAGCAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGACCACGATTTAAGTCGGGGGGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGAGCAATAACAGGCCCAGTTATTGTTGGAGATGACCCAGTGAGGAGCAAGGGCAGTCATCTGGAGCAGAGAGAGAAGTTAGGACTGACATCTGCCCCCAAAGGGCAGTCCAAGCTGCGGACCCCACCTCAAGAACCATCCAATGCAATTGAAAAAGTTGAGGTTGAAAAAATGAAGCAAGATGATGCGCTATCAGATTTAAGTGATCTGCTGGGAGAGCTTAAAGACATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCATTGAATCATCTGTACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTACTCGGAAAATAA 879 0.4369 MSGAKKSHLKDAKPSSVESWTNPFDSDDEEKNTKKYSSSRKTSSDRALVTLEVNTNPFNDDIDATKKSSLTSYAYKNDFCDSGGLENQSVQELESYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRSKGSHLEQREKLGLTSAPKGQSKLRTPPQEPSNAIEKVEVEKMKQDDALSDLSDLLGELKDMAVDMGSEIERHNKALNHLYDDVDELNFRMKGANQRGRRLLGK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00814 292 CDD SNARE_Qc 232 288 - -
Vian1g00814 292 CDD SNARE_SNAP25N_23N_29N_SEC9N 96 159 IPR044766 GO:0005484|GO:0031201
Vian1g00814 292 SUPERFAMILY SNARE fusion complex 88 158 - -
Vian1g00814 292 SUPERFAMILY SNARE fusion complex 230 290 - -
Vian1g00814 292 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Vian1g00814 292 FunFam SNAP25 homologous protein SNAP33 224 291 - -
Vian1g00814 292 Gene3D - 224 291 - -
Vian1g00814 292 SMART tSNARE_6 93 160 IPR000727 -
Vian1g00814 292 SMART tSNARE_6 222 289 IPR000727 -
Vian1g00814 292 MobiDBLite consensus disorder prediction 24 41 - -
Vian1g00814 292 FunFam SNAP25 homologous protein SNAP33 84 161 - -
Vian1g00814 292 MobiDBLite consensus disorder prediction 1 48 - -
Vian1g00814 292 Gene3D - 84 161 - -
Vian1g00814 292 MobiDBLite consensus disorder prediction 182 220 - -
Vian1g00814 292 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00814 Vian-Chr1 8498662 8500311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00814 K18211 - gmx:100809874 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00814 1 8498662 8500311 Vian1g00814 1 8498662 8500311 ECH