Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00780 ATGAATTCTATTGCTCTCAAAACCTTTGTCGGCCTCCGGCAAACCTCGCCGGATGCGCCGCATTTCGCTGCCCAGCCAAGACTCCCCCCATCTCACCGAAAGTTTAGAATTGTGGCCGGCAAATTCAGCCCGAAGCTGCAGGGGCGGAACCTACGAGTGGCAGTAGTGGGTGGTGGTCCCGCCGGCGGCGCGGCGGCGGAGGCGCTGGCGAAGGGTGGCGTGGAGACTTTCCTTTTCGAGCGGAAGCTGGACAACTGCAAGCCGTGCGGGGGAGCGATTCCGCTGTGCATGGTGGGGGAGTTCGACCTGCCGCTGGACATCATTGACCGGCGCGTAACGAAGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATCGGGAGAACGCTTAAGCCGCACGAGTACATTGGTATGGTCCGGCGCGAGGTCCTGGATGCTTACCTGAGAGAGCGGGCGAAAGAGAATGGGGCTAGTGTCATCAACGGGCTGTTCATGAAAATGGATATTCCGAAGGATAACACCAGCCCCTACGTTCTTCATTACTCTTCCTACGATAACAAAATCGGTGGGGCCGGTGAGAAGCGTACCTTGGAAGTTGACGCTGTCATTGGTGCTGATGGCGCTAATTCTAAAGTCGCCAAGTCTATTGATGCCGGTGAATACGAGTACGCCATCGCCTTTCAGGAGAGGGTAAAAATTCCGGATGATAAGATGGCGTATTACGAGGACCTAGCGGAGATGTACGTGGGGGATGATGTTTCTCCGGATTTCTACGGGTGGGTATTTCCAAAATGTGACCATGTGGCTGTTGGAACTGGTACCGTGACACACAAGGGGGACATCAAGAAGTTCCAACTAGCAACAAGGAAGAGAGCAGAAGACAAAATTTTGGGAGGCAAGATCATCAGAGTGGAGGCTCACCCTATCCCGGAACATCCGCGGCCGCGAAGGTTGTTGGGTAGAGTGGCTCTGGTGGGCGATGCTGCTGGGTATGTAACGAAATGCTCCGGAGAGGGAATCTATTTTGCGGCGAAGAGTGGTAGAATGTGTGCAGAGGCAATTGTTGAAGGTTCGGAGAATGGGAAGAGGATGGTGGAAGAAGGGGACTTGAGGAAGTACTTGGAGAAGTGGGATAAGACTTATTGGCCGACTTACAAGGTGTTGGATGTGCTTCAGAAGGTGTTTTACAGGTCGAACCCAGCTAGGGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTGCAGAAGATGACATTTGATAGCTATTTGTACAAGACAGTGGTGCCTGGAAATCCTCTGGAGGATCTGAAATTGGCCATTAACACCATTGGGAGCTTAGTTAGGGCCAGTGCCATAAGGAGGGAGATGAACAAACTTAATGTATGA 1389 0.5277 MNSIALKTFVGLRQTSPDAPHFAAQPRLPPSHRKFRIVAGKFSPKLQGRNLRVAVVGGGPAGGAAAEALAKGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRERAKENGASVINGLFMKMDIPKDNTSPYVLHYSSYDNKIGGAGEKRTLEVDAVIGADGANSKVAKSIDAGEYEYAIAFQERVKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRASAIRREMNKLNV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00780 462 NCBIfam geranylgeranyl diphosphate reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Vian1g00780 462 NCBIfam geranylgeranyl reductase family protein 53 355 IPR011777 GO:0016628
Vian1g00780 462 FunFam Geranylgeranyl diphosphate reductase 50 457 - -
Vian1g00780 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 224 IPR023753 GO:0016491
Vian1g00780 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Vian1g00780 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Vian1g00780 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Vian1g00780 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Vian1g00780 462 NCBIfam geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Vian1g00780 462 Gene3D - 50 461 IPR036188 -
Vian1g00780 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 49 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00780 Vian-Chr1 8144365 8146254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00780 K10960 - gmx:100779933 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00780 1 8144365 8146254 Vian1g00780 1 8144365 8146254 ECH