Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00755 ATGTCGACTCCGGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAGGACCCACCTGCAGGAATCAGTGGTGCCCCTCAGGATAACAATATAATGCTGTGGAATGCTGTCATATTTGGTCCTGATGACACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTCCAGTTTACTGAGGATTATCCTAACAAGCCACCGACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACACTACTAATGTCGTTTTTCTTCTATGGGAAGTTTATGCTGATGGAAGTATTTGTTTGGATATATTACAAAATCAATGGAGTCCTATATACGATGTAGCTGCAATACTCACTTCTATCCAGTCACTACTTTGTGATCCCAACTCAAGTTCTCCTGCAAATTCAGAAGCAGCTCGAACTTTTAGTACGAACAAGCGCGAGTACAATAGACGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA 489 0.4294 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNTTNVVFLLWEVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNSSSPANSEAARTFSTNKREYNRRVREIVEQSWTAD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00755 162 SMART ubc_7 7 160 - -
Vian1g00755 162 FunFam Ubiquitin-conjugating enzyme E2 2 1 158 - -
Vian1g00755 162 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 160 IPR000608 -
Vian1g00755 162 SUPERFAMILY UBC-like 1 160 IPR016135 -
Vian1g00755 162 Pfam Ubiquitin-conjugating enzyme 8 154 IPR000608 -
Vian1g00755 162 CDD UBCc 7 155 IPR000608 -
Vian1g00755 162 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 159 - -
Vian1g00755 162 Gene3D Ubiquitin Conjugating Enzyme 1 158 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00755 Vian-Chr1 7869144 7871412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00755 7 145 Miscellaneous Gene Families AT1G17280 28.169 3.78e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00755 K10573 - ncol:116247691 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00755 1 7869144 7871412 Vian1g00755 1 7869144 7871412 ECH