Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00732 ATGAAGATGATGAGTGAGACGTGGACAACAATGGGGTCAACCTTAGCTAGCTTGATGTTCTTGTGGACGATCATGAGACAGTACTGTCCCTACGGGGTTCAACGTTTCTTTGAGAAGTACACACATAGGATCATGAGTTACTTTTCCCCTTATATTCGAATCTCCTTCCATGAGTACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCGGCTGTGGAAGCATATCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTGAAAGCTGAAATGGGTAAAGATAGCAGCAACTTGGTTTTGACTATGGATGAGTATGAAAGGGTAACGGATGAGCACAAGGGTGTCAAAGTTTGGTGGGTCTCTAGCAAAGTGATGTCACCAAGCAGGTCTTCAATGTCCTATTATCCAGAACAGGAGAGAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGAGACCTGATAACTGAGTCCTATTTGGAGCATGTTATGAGGGAGGGGAAGGAGATTCGTCTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAGACGATGTGGAGCCACATTGTGTTTGAGCACCCTGCTACTTTTGAAACAATGGCCTTGGAGCCTGAGAAGAAAAAGGAGATCATTGAGGATTTGATCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAAAGGGGGTACCTTCTTCATGGCCCTCCTGGGACAGGCAAGTCCACCATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGTTGAGGAAGCTTCTGATTGAGACAACCAGTAAGTCTATAATTGTTATTGAAGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAGGCAGATAAGTTGTCGGACGAGGAAACTGATAAGGATGTTGTTGGAAGGAAAGAGGCCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCCTGTGGAGGGGAGAGGCTGATTGTGTTCACAACCAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAACTCTCCTATTGCACTTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTTAAGCTACAAACTCATCCATTGTTTGACACCATCAAGAGGCTAATAGAGGAGGCCAACATCACCCCAGCTGATGTTGCTGAAAATCTCATGCCCAAGTCCCCACTGGATGATCCTCACAAGTGCCTCTCCACCTTGATTCAAGCACTTGAGAAAGCTGCAAAAGCTGCAAAAGCTGAGGAGCTGGAGCAGAATTGTCCCATTCAACATGACCAACTTCTTCAACAAAATGGCTCCATTAAGGAAAACGGTGAGCTTCCACCTGACAAAGCAGTGAATCAATGCCAGCTATGA 1518 0.4532 MKMMSETWTTMGSTLASLMFLWTIMRQYCPYGVQRFFEKYTHRIMSYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDEHKGVKVWWVSSKVMSPSRSSMSYYPEQERRFYKLTFHNKYRDLITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKKEIIEDLITFSKSKDFYARIGKAWKRGYLLHGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDEETDKDVVGRKEAKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYFKLQTHPLFDTIKRLIEEANITPADVAENLMPKSPLDDPHKCLSTLIQALEKAAKAAKAEELEQNCPIQHDQLLQQNGSIKENGELPPDKAVNQCQL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00732 505 Coils Coil 448 471 - -
Vian1g00732 505 SMART AAA_5 242 397 IPR003593 GO:0016887
Vian1g00732 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 460 IPR027417 -
Vian1g00732 505 Gene3D - 202 390 IPR027417 -
Vian1g00732 505 PANTHER BCS1 AAA-TYPE ATPASE 10 463 - -
Vian1g00732 505 Pfam ATPase family associated with various cellular activities (AAA) 247 394 IPR003959 GO:0005524|GO:0016887
Vian1g00732 505 FunFam AAA-ATPase ASD, mitochondrial 198 391 - -
Vian1g00732 505 CDD RecA-like_BCS1 221 391 - -
Vian1g00732 505 ProSitePatterns AAA-protein family signature. 365 384 IPR003960 GO:0005524|GO:0016887
Vian1g00732 505 Gene3D - 391 452 - -
Vian1g00732 505 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00732 Vian-Chr1 7550261 7551778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00732 207 393 Miscellaneous Gene Families AT5G58870 29.231 1.48e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00732 - - gmx:100798176 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00732 1 7550261 7551778 Vian1g00732 1 7550261 7551778 ECH