Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00720 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCCTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCAAAATTGAAGCAGTATAAAATCGATGCGCGCCGCGAACAGTGGCTTTCGCAAGGTGTGGTGAAGAGTAAGGGATGCAAGGACGGTGTGGACGATGGCGTCGTTCACGCGCCGCCGCCGTTGGTAAATCACGGCAATCACTCCTTGGAGCCTCTTAACACGAGGCGCGAAGGCGAAGAAGACGACGAATTGATTCATCATGACAGCGATTCGGAGTCTCCTACCAACTGTCCTGCCGGCGTATTGTGTGGCAATGATTCGGGAACAAACTTCACCGGAAGCAGTAGTGGCGGGAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCCGGGAACATTACCGAGGAGGAGGAGGAAGAAGGTGAGGACGAGGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAATTCCTTGTTCTGATTCACCCCCTGTGGTTTTACCTCGTGAAGGATCCAATTTAGAGTCTCCGAATTCAAAACCCGAGAGTAGTAGATTGGTTCCTTGGGGCTCTGGTAGTAGCCGAGCGTGGAGGGCCGATGACGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGCCGCAGTGTTGGAGGGGTCCCCTGGGCTCGTGTCTCCACGCCTTCCTCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACCAGTTTCTTGCCTTGTTTTTGTGGGTTTAGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGGCGTTGTCCCGGGTGTAGGAAGCCTTATGAGTGTGAACCAGTTGAGACAGAGGCGAGTGTGCATGGAGGCAACCTCACTCTTAAGTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTGA 1005 0.5393 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGVVKSKGCKDGVDDGVVHAPPPLVNHGNHSLEPLNTRREGEEDDELIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSGGCCSGNITEEEEEEGEDEDDGCLDDWEAMADALAADDKHEIPCSDSPPVVLPREGSNLESPNSKPESSRLVPWGSGSSRAWRADDAFRPQSLPNLSKQHSMPNPDRRSVGGVPWARVSTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGNLTLKLARSCSMIERS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00720 334 CDD mRING-HC-C4C4_CNOT4 258 302 IPR039515 -
Vian1g00720 334 MobiDBLite consensus disorder prediction 226 245 - -
Vian1g00720 334 MobiDBLite consensus disorder prediction 79 99 - -
Vian1g00720 334 FunFam RING/U-box superfamily protein 252 317 - -
Vian1g00720 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 316 IPR013083 -
Vian1g00720 334 MobiDBLite consensus disorder prediction 143 158 - -
Vian1g00720 334 MobiDBLite consensus disorder prediction 192 210 - -
Vian1g00720 334 MobiDBLite consensus disorder prediction 173 212 - -
Vian1g00720 334 Pfam RING/Ubox like zinc-binding domain 259 305 - -
Vian1g00720 334 SUPERFAMILY RING/U-box 253 310 - -
Vian1g00720 334 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Vian1g00720 334 MobiDBLite consensus disorder prediction 1 158 - -
Vian1g00720 334 MobiDBLite consensus disorder prediction 100 141 - -
Vian1g00720 334 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 255 331 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00720 Vian-Chr1 7367746 7368942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00720 - - var:108330419 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00720 1 7367746 7368942 Vian1g00720 1 7367746 7368942 ECH