Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00506 ATGATTCTCATTATCTCCCTCGTTTTTTCTCTTTTCTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGCGTGGCAGATCTTGCAGGTCCTATTGGTCCTGCAGGATACTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGCCATTGCTGGCAACACCTCAAATATTATCAAAGCTGCAGTGACACCTGCATTTGATGCTCAGTTTCCTGGTGTAAATGGCCTTGGCATATCGGCAGCCCGCCTGGACTTGGCAGGAGGTGGAGTTATACCACTTCATACTCATCCCGGAGCTTCAGAATTACTTGTTGTAATACAAGGAAGCATTTTGGCAGGATTCATTTCATCTGACAACTCTGTCTACATCAAAAAACTTAATAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGCTGCACTTCCAAATCAATGCAGGTGGTTCTTCAGCCCTGGCTATTGTTAGCTTCAGTAGCTCCAACCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCACTGATAGTGCAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4545 MILIISLVFSLFSFSHASVLDFCVADLAGPIGPAGYSCKKPSKVTADDFAYSGLAIAGNTSNIIKAAVTPAFDAQFPGVNGLGISAARLDLAGGGVIPLHTHPGASELLVVIQGSILAGFISSDNSVYIKKLNKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVQTTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00506 208 CDD cupin_OxOx 15 204 IPR001929 GO:0030145
Vian1g00506 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 199 - -
Vian1g00506 208 SMART Cupin_1_3 52 198 IPR006045 -
Vian1g00506 208 FunFam Auxin-binding protein ABP19a 16 207 - -
Vian1g00506 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Vian1g00506 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Vian1g00506 208 Pfam Cupin 54 182 IPR006045 -
Vian1g00506 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Vian1g00506 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Vian1g00506 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Vian1g00506 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00506 Vian-Chr1 4794492 4795118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00506 1 207 Miscellaneous Gene Families AT5G20630 68.750 9.65e-97 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00506 - - gmx:100800387 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00506 1 4794492 4795118 Vian4g00346 4 3891721 3892353 PCT