Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00381 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGCGGTCGCAGCTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGCGAGTTGAAAGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATGAAGCCTATGGGAAATATTGCCAAAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGACGATATTGATGATTTTTTAGTTCTTGTTCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAAAATAATGGGGACGTTGTGAACATTTTTGCGGGAGTGGATTACTCTTCCACCTGTGCTTTGGTGAACTACCGAGTGAAGCGATTTGTACAGGCTTGTATTCATGCTTTGCATCAGAATAGAAATCAGCTAAAAGGCCAGCTTTTGTTGACTCCTGAGGAGTTGAATGTATCAGCTGTTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCGAAACAATGCACTTGGCCTACTAAGAGAGATCATTCTTACAGGGAAGGGTAATGATGCAGAAAATAATTTTTCCATTGGCAAGGGTTCATCATTGGAGCGTGTGCTTATGGCTGTAGTATGTCATGTTGGTCAGGAGCCATGCATCTGTTCACATATTAATCCAAGATATACTTTTGCATCTCAGATCATCACAATTCCTTTTTTGTGGCATATTTTCCCTAATTTACAACAGATGTTTGCCGCAGAGGACCTGAGCCAATTTTACATGCATCAAATGGCACAGTTTGGGCAAAATATAATCAACTTTCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCCTGTATGCTTGGAAATGTATTGGAAATTGCTGGAATTGCTTTGTCTCATCCTCTCTGTTCATTTGATATGGCAATAGACCTTGCGGCTGTCACTACAGTTTTGCTGGAGGCAGTCCCATCTGCAAAAACTTTCAATGGTACAGAAAGTTCTATGAGCGCTGACGATGATATGACTGGAGATGAAGTTAAGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCCGTAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAACGATTCAGATTATGGACCCAATGATAAAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCGGCAAGCTGCCACTTGAGCGGATTATGACCGTGCTTGCTTACAGAACTGAACTTGTTATTACCCTTTGGAATTTTACAAAGAAGTGTCACGAGAACCAAAAGTGGTCATCACTCACCTCAAATGATGCACCTGGCTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATAATACTACATCGTCTAATTCAGTAAAATCAGTTCCAAATAGTTCAGTTAGAAAGGGGCGGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGCAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGTGTGAATGAACTATTTATCTCTCAGGCTTTAATAGAAAATACGCGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACTAGCCGGGTTAAAATATACTCTTCTCAACTGGCTGCTGTTAAGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAATCGGTTCAGAATAAAACGAGACCGTATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAAATAGTCTTCGAGGATTGATCCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCGGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCCTCCTTGGACCCGGAATTGTATCGCCATCTCATTTTTCTCAAGCATTATAAGGGAGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGGGGAAGAAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCGCATTTCTTGAGGGGATTTGAACAACTTATTCAGAAGGATTGGATCGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGATGATTTACGGCTGCACACCAACTATGCAGGAGATTATCGTAGTGACCACTATGTTATTGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTCGTAACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGAAATCTCGAACCTTTGTTTTGCATTCAAAGTGCTTCCAGTAATGCTGCGGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTGAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAACTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3081 0.4057 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVKTEQSKLREQFYEAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADDIDDFLVLVQICRLLWWFVQNNGDVVNIFAGVDYSSTCALVNYRVKRFVQACIHALHQNRNQLKGQLLLTPEELNVSAVPLLEVLVLLIDSKLPWSCKIVEYLFRNNALGLLREIILTGKGNDAENNFSIGKGSSLERVLMAVVCHVGQEPCICSHINPRYTFASQIITIPFLWHIFPNLQQMFAAEDLSQFYMHQMAQFGQNIINFLPKDISNEFPSHACMLGNVLEIAGIALSHPLCSFDMAIDLAAVTTVLLEAVPSAKTFNGTESSMSADDDMTGDEVKEIALDRKLEQQINNAVNPRFLLQLTNILFKEISSVNDSDYGPNDKEVTAVDAVCGFLHVTFGKLPLERIMTVLAYRTELVITLWNFTKKCHENQKWSSLTSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRTLIIILRQVLWQLLWVNNTTSSNSVKSVPNSSVRKGRFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSPSNFHADGVNELFISQALIENTRANEILKQAPFLIPFTSRVKIYSSQLAAVKQRHGSQAVFSRNRFRIKRDRILEDAYNQMSQLTENSLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFEQLIQKDWIDMFNEHELQLLISGSVDSLDIDDLRLHTNYAGDYRSDHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQSASSNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00381 1026 ProSiteProfiles HECT domain profile. 685 1026 IPR000569 GO:0004842
Vian1g00381 1026 SMART hect_3 678 1026 IPR000569 GO:0004842
Vian1g00381 1026 CDD HECTc 664 1024 IPR000569 GO:0004842
Vian1g00381 1026 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1026 IPR044611 GO:0000209|GO:0061630
Vian1g00381 1026 MobiDBLite consensus disorder prediction 11 28 - -
Vian1g00381 1026 FunFam Putative Ubiquitin-protein ligase E3C 790 869 - -
Vian1g00381 1026 Pfam HECT-domain (ubiquitin-transferase) 721 1026 IPR000569 GO:0004842
Vian1g00381 1026 Gene3D Hect, E3 ligase catalytic domain 790 869 - -
Vian1g00381 1026 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vian1g00381 1026 Gene3D Hect, E3 ligase catalytic domains 666 904 - -
Vian1g00381 1026 FunFam Putative Ubiquitin-protein ligase E3C 908 1025 - -
Vian1g00381 1026 SUPERFAMILY Hect, E3 ligase catalytic domain 656 1018 IPR035983 GO:0004842
Vian1g00381 1026 MobiDBLite consensus disorder prediction 1 28 - -
Vian1g00381 1026 Gene3D Hect, E3 ligase catalytic domain 908 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00381 Vian-Chr1 3386840 3404570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00381 K10589 - gmx:100789933 1842.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00381 1 3386840 3404570 Vian1g00381 1 3386840 3404570 ECH
Vian1g00381 1 3386840 3404570 Vian6g01145 6 29007559 29048226 PCT