Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00376 ATGACGCTGGTCGCGCTCTTCCTCACCGCCACCAAGCTCGCCGGAGCTCTCTTTACTCTCACCGTTGCCGCCAACGCCTTCTCCTACTCCCGCTTCCGCAAGAACAACCTTCGCCGATTCCGCTCCCCTATCGACGAAACTTCCGACACTCTCGCCGACTTCAACGTCTCCGAAGAAGAGTTTTTCTTTGGTCTGGGTACAGCACCGGCTCATGTCGAGGACAGGCTTGATGATGCTTGGATCCAGTTCGCTGAGGAAAAGACCGGTGACTCCGAGGGGAGGCAGACAGTGGATGCTGTGATGGGTTCTGCTTCTGGCGACGGTGGTTCCCAGCGGGCCGTGACGTCTCCGCGGGGCAGGAAGCCTCTTAAGTTGGCTATGGAGGCCATGATTAGGGGATTTGAGAAGTACTTGGAAGTGGAAGGAAAAGAAGGGGAAGAAGAACCTCGTCCTAATGTAACTGCTTGGCATAATGTTCCACGCCCGGAGGAGAGGTTAAGATTTTGGTCTGATCCTGAAACAGAAATAAATTTGGCCAAGGATACTGGTGTTACCGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAATGGAGCCAGTAAACAGCCTTAATGAATCTGTTAACTATGCTGCATTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCATATGGAATGAAGGTGATGCTTACACTTTTCCATCACTCACTTCCACCCTGGGCTGGTGAATATGGCGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTATTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTACTGTGCTGGTGCTTGGCCTGGAGGTCATCCTGATATGCTTGAGGTCGCAACTTCAGCACTTCCAACTGGTGTTTTTCAGCAGGCCATGCATTGGATGTCTGTTGCACACTCAAAGGCATATGATTACATCCACGGACAAAGTAACCCATTAAATTCAATAGTTGGTGTAGCACATCATGTGTCATTTATGCGACCCTATGGTTTGTATGACATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGGAATATCTGAAAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCGGGGGCAGGCCTGAAGCTGGTGGAAAATGATGAGTATAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGTTGCTTCAATTCCATGAAAGATACAGACATCTAAAAATTCCCTTCATCATTACTGAAAATGGGGTTTCGGATGAGACAGATTTGATCCGCCGGCCATATCTCTTGGAGCATTTGCTAGCTGTTTATGCTGCCATAAAAATGGGTGTACGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAATGGGCCGATGGATATGGTCCCAAGTTCGGACTTGTTGCAGTTGACCGGGCAAATAATCTTGCACGGATCCCTCGCCCCTCTTACCATCTATTTTCTAAAATTGTGAACACGGGCAAAGTTACACGTGAAGATCGTGAACGAGCATGGGATGAACTCCAAAGAGCTGCCAAAGAGAAGAAAACGAGACCATTTTATCGGGCTGTGAATAAACACCGTTTAATGTATGCAGGTGGACTTGATGAGCCAGTACAGCGACCTTATATAGATCGAGATTGGCGGTTTGGTCATTACCAGATGGAAGGACTCCAGGATCACTTGAGCCGCTTCTCACGATTCATTATTCGACCCTTCTCCCCCAAAAAGAAAACAAAATCTCAAGAGAAGAATCCCAAATTAATTCTTCAGCCTCTTGAAACTTAA 1887 0.4679 MTLVALFLTATKLAGALFTLTVAANAFSYSRFRKNNLRRFRSPIDETSDTLADFNVSEEEFFFGLGTAPAHVEDRLDDAWIQFAEEKTGDSEGRQTVDAVMGSASGDGGSQRAVTSPRGRKPLKLAMEAMIRGFEKYLEVEGKEGEEEPRPNVTAWHNVPRPEERLRFWSDPETEINLAKDTGVTVFRMGIDWTRIMPMEPVNSLNESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEVATSALPTGVFQQAMHWMSVAHSKAYDYIHGQSNPLNSIVGVAHHVSFMRPYGLYDIAAVSLANSLTLFPYIDGISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYRHLKIPFIITENGVSDETDLIRRPYLLEHLLAVYAAIKMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTREDRERAWDELQRAAKEKKTRPFYRAVNKHRLMYAGGLDEPVQRPYIDRDWRFGHYQMEGLQDHLSRFSRFIIRPFSPKKKTKSQEKNPKLILQPLET 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00376 628 PRINTS Glycosyl hydrolase family 1 signature 452 463 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 PRINTS Glycosyl hydrolase family 1 signature 497 509 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 PRINTS Glycosyl hydrolase family 1 signature 440 448 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 PRINTS Glycosyl hydrolase family 1 signature 473 490 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 PRINTS Glycosyl hydrolase family 1 signature 383 397 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 Gene3D Glycosidases 137 538 - -
Vian1g00376 628 Pfam Glycosyl hydrolase family 1 380 526 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 Pfam Glycosyl hydrolase family 1 173 358 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 PANTHER GLYCOSYL HYDROLASE 104 372 IPR001360 GO:0004553|GO:0005975
Vian1g00376 628 ProSitePatterns Glycosyl hydrolases family 1 active site. 440 448 IPR018120 -
Vian1g00376 628 SUPERFAMILY (Trans)glycosidases 154 532 IPR017853 -
Vian1g00376 628 MobiDBLite consensus disorder prediction 609 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00376 Vian-Chr1 3322382 3326689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00376 6 603 Glycoside Hydrolase AT3G06510 63.537 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00376 K21362 - gmx:100792401 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00376 1 3322382 3326689 Vian1g00376 1 3322382 3326689 ECH