Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00358 ATGTGCCCTTCTGGTCGCCTCCTCAGCCCCCACGCCGCTGCCGCCGATTTCCGCCCCGCATTCGAAGTCCTCGACGCCGATCGCGACGGCAAAATAAGCCGCGACGACCTCCACGCCTTCTACGCGGGCGTTCATGGCGGAGTCGGCGGCGGAGATGAGTTAATTGGGGCAATGATGACGGTGGCCGACACGAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTGACGGGAAACGCGGAGACAATACCCGTGGGTAGTGGAGCCATGGAGGACGTGTTCAAGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCACGACCTCAAGACGTATATGGCCTGGGCGGGTTTTCCGGCCACCGACGAAGACATCAACGCGATGATACGCCTCGGCGGCGGCGACAAGAATGGCGGCGTGACGTTCGATGGTTTGCTTCGTATATTAGCCCTTGATTCTGCCGCTGCTCACTGA 486 0.6132 MCPSGRLLSPHAAAADFRPAFEVLDADRDGKISRDDLHAFYAGVHGGVGGGDELIGAMMTVADTNKDGFVEYEEFERVVTGNAETIPVGSGAMEDVFKVMDKDGDGKLSHHDLKTYMAWAGFPATDEDINAMIRLGGGDKNGGVTFDGLLRILALDSAAAH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00358 161 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Vian1g00358 161 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Vian1g00358 161 Pfam EF hand 93 115 IPR002048 GO:0005509
Vian1g00358 161 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Vian1g00358 161 Pfam EF-hand domain pair 17 79 IPR002048 GO:0005509
Vian1g00358 161 SMART efh_1 54 82 IPR002048 GO:0005509
Vian1g00358 161 SMART efh_1 128 156 IPR002048 GO:0005509
Vian1g00358 161 SMART efh_1 92 120 IPR002048 GO:0005509
Vian1g00358 161 SMART efh_1 16 44 IPR002048 GO:0005509
Vian1g00358 161 SUPERFAMILY EF-hand 15 153 IPR011992 -
Vian1g00358 161 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Vian1g00358 161 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Vian1g00358 161 PANTHER CALCIUM BINDING PROTEIN 93 150 - -
Vian1g00358 161 FunFam Calcium-binding protein CP1 10 79 - -
Vian1g00358 161 Gene3D - 9 159 - -
Vian1g00358 161 CDD EFh 16 80 IPR002048 GO:0005509
Vian1g00358 161 CDD EFh 94 154 IPR002048 GO:0005509
Vian1g00358 161 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00358 1 153 EF-hand Containing Proteins AT5G49480 56.790 1.31e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00358 K02183 - gmx:100527230 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00358 1 3181644 3182129 Vian1g00358 1 3181644 3182129 ECH