Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00354 ATGGTTCAAGAGCGACCCGAAAAACCAATGGAGGCGAAAAAGACCATGGAGTTCGAGCGGTTCGACGGTGTTGAGGACGACACAGACCATCATTTTCGAGATTCAAACGGTGGGAAGCGCTTCAACGATTCAAGGAGTGCACTTTACAAAACCATCATGAAAGAGTGGAAGATTCTCCAGAACAACTTGCCGGAATCAATCTACGTGAGGGTGTACGAGCGACGCATTGACCTAATGAGGGCTGTGATCGTAGGCGCCGAGGGCACACCGTACCACGATGGTCTCTTCTTCTTCGACATCGTGTTCCCGTCGGATTACCCGAACCACCCACCCAAGCTGTATTACTACTCCTTCGGATACAGACTAAACCCTAATCTGTACAGGAACGGAACGGTGTGCCTGAGCCTGCTGAACACGTGGCACGGTAAAAAGGAGGAGACGTGGAACCCATGCAAGTCCTCGATCCTGCAAGTGTTGCTATCGATCCAAGCGTTGGTTCTGAACGAGAAACCCTACTTCAACGAACCTGGTGTGGAGGGTTTGTCGTTTTTCATGATAAACGTGGAGAAGAAATCGTGCGTATACAACGAGACCGCGTATTTTCGCACTTGCAAAACCTCGTATCAACTGCTTCGGAGGCCACCTCGGAACTTCGAAGGGTTCGTGAGTTCCCACTTTCGCGAGCGAGGGGATCGCATAATCAAGGCGGGCAGGGAGTACATGAGTGGGCGCGTGAGGATCGGGTATTACTCGTGCAAGTCGGCTCCGTCTTCTTCGTCGGGGGTGCATGTTTCTCGGGATTTCAAGCGCTGGATGAAGGAGTTTTCCCCTGACTTTGTTCAAGCGCTTCGACAGAACGGTGGTTCAGCTTCGAACGAGGCTGGTTTAACGATTATCAGGAATTACTTTTATTTCCGGTCCGATAACGCCGATGAAGATCGCATCGATCCCGAGGAATCCCCAATCAAAGGCGGCGGATTATTCAAATCGGTCATGGGTAAGATAAAAAAGTCTTTGGGATTGAAGAAAACTGGAAAAAAGAATTAA 1047 0.5005 MVQERPEKPMEAKKTMEFERFDGVEDDTDHHFRDSNGGKRFNDSRSALYKTIMKEWKILQNNLPESIYVRVYERRIDLMRAVIVGAEGTPYHDGLFFFDIVFPSDYPNHPPKLYYYSFGYRLNPNLYRNGTVCLSLLNTWHGKKEETWNPCKSSILQVLLSIQALVLNEKPYFNEPGVEGLSFFMINVEKKSCVYNETAYFRTCKTSYQLLRRPPRNFEGFVSSHFRERGDRIIKAGREYMSGRVRIGYYSCKSAPSSSSGVHVSRDFKRWMKEFSPDFVQALRQNGGSASNEAGLTIIRNYFYFRSDNADEDRIDPEESPIKGGGLFKSVMGKIKKSLGLKKTGKKN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00354 348 SMART ubc_7 50 208 - -
Vian1g00354 348 SUPERFAMILY UBC-like 41 215 IPR016135 -
Vian1g00354 348 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 11 287 - -
Vian1g00354 348 FunFam Putative ubiquitin-conjugating enzyme E2 38 8 286 - -
Vian1g00354 348 Gene3D Ubiquitin Conjugating Enzyme 5 283 IPR016135 -
Vian1g00354 348 Pfam Ubiquitin-conjugating enzyme 52 171 IPR000608 -
Vian1g00354 348 CDD UBCc 49 176 IPR000608 -
Vian1g00354 348 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 47 208 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00354 Vian-Chr1 3139728 3140774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00354 12 295 Miscellaneous Gene Families AT2G33770 46.479 5.15e-74 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00354 K10581 - gmx:100791343 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00354 1 3139728 3140774 Vian1g00354 1 3139728 3140774 ECH