Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00345 ATGAACGCCGTCCCTTCTTCTTCCTCTTCCGCCTTCGCTTTCGTAACTCAGTCCAAGAACCCTAATTATATCTTCAAGCTCACACATAAAGTACCCATTTTGCCCCTACACTCACATGCTCCGTGTTGCTCTCTCAGTGACTCATCCTCCTCGTACACCACGGTGCTGGACAAAAGTTCCCTTTCATCGGATCAGAATTACAGCAATGCAGTTTCGCCCGAAGACTCGGGCTCCGTGGATGCCCTTGCCGTCCGCCGGCCGTTGACTGATTTTTCCGGCGAAGAGGAAGAAGAGAAGGAGGTGGAGGAGGAGGAAGAGAAGGAGAATGAGGCGGATGACGGTGGTGACGCGAAGGCTTCCACGATCGACGCGGGGCTCGCGAAATTCGCGAAGAAGATGCCCATGTTTGAACCTGAGAGGGTGGAATCGAAAGAGAGACCCCTCAAAGTGAATTTGGACTTGGCGTTATACAGGGCGAAGCTTATGGCTAGAAGAAGCTTTCGATATGAAGAAGCAGAGGCATTGCTTCGAAAGTGTATAAGCTTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCGAAAACAGGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCTTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATTTCAGGAGGGCAAGAGAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGGTGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTACTCGGTAAAGGTCTTCAATATGGTGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAAAAGATATCAGCAGGCTCGTTATTTATTCAATCAGGCCACAAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCTCAAATGGAGGTGGAACAAGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTGCAGGCTAGTCCCAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCAAACATTGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGCCACACTCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCGTCAGAATTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATAAAGCCAGAGAATTCTACCAAAAAACACTCTCAATTGATCAGAACAGTGAAACTGCTGCCAGATGCCTTCAGGCTTGGGGTGTTCTGGAGCAGAGGCTTGGCAATCTTTCAACTGCACGTAGATTATTTAAATCCTCGCTGAATGTAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCAACAATGGAGGAAGAACAAGGAAACTCCGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTGATGGGATTCTTAGATATTTTAGACCCGGCCATTGACACTTTAAAGACGCTCCTCAAGCTGAGTCCAAATTCCTACAATATGCCATTTAATTCTTTGAGAAATATTTCGGGAACAGATAAAAACAGTGACGATTTTTCTATTGAAGACGATGATGAGGATGATGCAAATGGTGAAAGTGACTTCGATTTGGATGCTTTCATTATGAAAAGACTATCCTTAGATTCCTCCAATCTGGAATTGTTGTCTTGCATACAATTAAAATCATATATCACTTATATAGTCTCGTTAGATCTGCTACACCTTGAACTGTTGCATCAGCTCCATCTTTCGAGATATAAAACTGTTGCATCAATGATTCGTCTGTCTGGGTTGGAGAAAGAAAAGACCGAAAAGTAA 2007 0.4454 MNAVPSSSSSAFAFVTQSKNPNYIFKLTHKVPILPLHSHAPCCSLSDSSSSYTTVLDKSSLSSDQNYSNAVSPEDSGSVDALAVRRPLTDFSGEEEEEKEVEEEEEKENEADDGGDAKASTIDAGLAKFAKKMPMFEPERVESKERPLKVNLDLALYRAKLMARRSFRYEEAEALLRKCISFWPEDGRPYVVLGKILSKQSKTGEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNFRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLGKGLQYGGQNEYIYQTLALLEARAKRYQQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGVFEANIGNIDKGRKLLKIGHTLNPRDAVLLQSLALLEYQHSTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNMNKAREFYQKTLSIDQNSETAARCLQAWGVLEQRLGNLSTARRLFKSSLNVNSQSYVTWMTWATMEEEQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKTLLKLSPNSYNMPFNSLRNISGTDKNSDDFSIEDDDEDDANGESDFDLDAFIMKRLSLDSSNLELLSCIQLKSYITYIVSLDLLHLELLHQLHLSRYKTVASMIRLSGLEKEKTEK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00345 668 Gene3D Tetratricopeptide repeat domain 149 222 IPR011990 GO:0005515
Vian1g00345 668 MobiDBLite consensus disorder prediction 87 119 - -
Vian1g00345 668 MobiDBLite consensus disorder prediction 94 111 - -
Vian1g00345 668 Pfam Tetratricopeptide repeat 296 357 - -
Vian1g00345 668 Pfam Tetratricopeptide repeat 231 279 - -
Vian1g00345 668 Pfam Tetratricopeptide repeat 428 458 IPR019734 GO:0005515
Vian1g00345 668 SUPERFAMILY TPR-like 355 564 IPR011990 GO:0005515
Vian1g00345 668 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Vian1g00345 668 ProSiteProfiles TPR repeat profile. 324 357 IPR019734 GO:0005515
Vian1g00345 668 FunFam PsbB mRNA maturation factor Mbb1 395 543 - -
Vian1g00345 668 FunFam Uncharacterized protein 137 394 - -
Vian1g00345 668 SUPERFAMILY TPR-like 91 402 IPR011990 GO:0005515
Vian1g00345 668 Gene3D Tetratricopeptide repeat domain 223 561 IPR011990 GO:0005515
Vian1g00345 668 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 29 617 IPR044624 GO:0003729|GO:0006397
Vian1g00345 668 Coils Coil 91 114 - -
Vian1g00345 668 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 187 220 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 256 289 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 153 186 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 463 496 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 426 459 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 392 425 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 324 357 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 222 255 IPR019734 GO:0005515
Vian1g00345 668 SMART tpr_5 290 323 IPR019734 GO:0005515
Vian1g00345 668 SMART hat_new_1 338 370 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 477 509 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 304 336 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 201 234 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 236 268 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 406 438 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 440 475 IPR003107 GO:0006396
Vian1g00345 668 SMART hat_new_1 270 302 IPR003107 GO:0006396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00345 - - vun:114175850 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00345 1 3069368 3077469 Vian1g00345 1 3069368 3077469 ECH