Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00322 ATGACCATCGACTTAGATTCCATCGCTCGTAAAATCGACGTTGATAATAGCATTCCCCTCCGCTACTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAAGTATCTACAGGGAGGAGAATAACGTAGTTGACTTGTACATTATACTCGTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCGTATCATCGAGATTATCATGCTTCGCTGCCCAATGAAAGAGCAGCTTATAAGAAGAGATCACGACCTGTATTGGATGAGCTTGAATCTTTGAAGCCCGAGTTTAAACGCCGGGTGGAAAAATTAAAAGACTTGCCTGTAAAAGCTTCATTGCCCAAGGAAAATGGCTACAATAAGGCTTTACAGAGTTCTGTAAATTCATCTTTGGAGTGGCCGGTTGTCAATAAAAGTAATAACTTGAGTGTGGATTTTAAACAGCCTTCTGGTTTCGGTTCACACTCTTCATGGAATTATAATAGTATGTCATCATCAGATTCCATGCCTATTGATAAGCAGTTTCAGAAACTATCTCTTAGTCTACCTGCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTGATCTCGCACACATGATTGATTCAAGCCTGAATCCAACTGGGCTGTATGACATTGTGGCAATTAAAGATGTCGATCAAGGACCAGCTACATCCACCATGGACGCAGTTCTCTCCTTGGATGATGGAAGATGGTTGCATCCTTCTGTTGAGTCTGGTTCTTCTGTCGTAACAGAATCAAGGGAAGACCCCTTACAATCGCTCAACATCAAGCAACCTTTGCCACCTCCTGTTCTTGCACAGGTGCACCCAGAATGTGCCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGACCGGGACCTGCTAAATCTTCTCATGATTCTGAACTTGGTCCAACAACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCACAGAACACACGGAAGAACTTAGAGACGTGTGGTGTTCTTGCAGGGTCCTTGAAAAACAGGGTATTTCATATCACGACACTTATAATCCCAAAGCAGGAATCGACCTCAGACTCGTGTTCAACTTTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTCTTTCCTTTAGGTTGGATACATACACATCCATCACAAACTTGTTTCATGTCTTCAGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACTAGTCCACATGGCATATTTCATCTATCTGATCCAGGTGGTGTTTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCACGAAGAGCCTTCGGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAACGCTAACTTGAGGTTCGATGTTGTTGACCTTCGAGAGCGATGA 1536 0.4219 MTIDLDSIARKIDVDNSIPLRYYYRIADNLLKQASIYREENNVVDLYIILVRFLSLVSETIPYHRDYHASLPNERAAYKKRSRPVLDELESLKPEFKRRVEKLKDLPVKASLPKENGYNKALQSSVNSSLEWPVVNKSNNLSVDFKQPSGFGSHSSWNYNSMSSSDSMPIDKQFQKLSLSLPAPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSDLAHMIDSSLNPTGLYDIVAIKDVDQGPATSTMDAVLSLDDGRWLHPSVESGSSVVTESREDPLQSLNIKQPLPPPVLAQVHPECAHIPPSKVADPRPGPAKSSHDSELGPTTYQHLHIPVKMMEDFLRLASQNTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLRFDVVDLRER 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00322 511 MobiDBLite consensus disorder prediction 309 329 - -
Vian1g00322 511 Gene3D - 2 124 - -
Vian1g00322 511 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Vian1g00322 511 PANTHER AMSH-LIKE PROTEASE 3 509 - -
Vian1g00322 511 CDD MPN_AMSH_like 332 509 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vian1g00322 511 Coils Coil 86 106 - -
Vian1g00322 511 FunFam AMSH-like ubiquitin thioesterase 3 320 511 - -
Vian1g00322 511 SUPERFAMILY JAB1/MPN domain 334 465 - -
Vian1g00322 511 Gene3D Cytidine Deaminase, domain 2 319 511 - -
Vian1g00322 511 ProSiteProfiles MPN domain profile. 335 465 IPR037518 -
Vian1g00322 511 SMART pad1_6 334 462 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian1g00322 511 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 331 438 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian1g00322 511 SUPERFAMILY USP8 N-terminal domain-like 4 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00322 Vian-Chr1 2861990 2869189 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00322 K11866 - gmx:100812784 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00322 1 2861990 2869189 Vian1g00322 1 2861990 2869189 ECH