Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01026 ATGTCTAGTCTCACGCTCGAGATGTATATACCTCGCGTGAGAGGGTGTGTTGGAAGTTCCACATCGACTAGAGATAAGACCAATTTAAAATATATAACTTCAGGTGTAAGTCAAGCAGTTCAAGCTTTAAAGGGAGAAGTTGACGTGCTAATCAAGGGAGTAGGAGAAAGAAATGTAGCAAAAGAAGTAAAACATATTCTTGAGATGGCTAGACGAGCATCATCGAAGCGGGAAACTCTCCATACAGATTTTCTAACACCTCCAGTGCTAAAGGAATCTATGCAAATTTTGGAAAAATTAGCAGACGTGAAAGCAATTGCTCAAGGAGGTTATCCTCAGGCTGAACGCTGTCGGATATCAGTTGGACATCCAGAAGAACTGACTAGTGATCCAGATGTTATTTCAGCATTAAGCATTAAAGGGAACTTCCAGTTTGAACCTTGCTCACATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGGGATATTATATTGCAGGGAGAACAGGGTGCGCAAATTATTGTTGTGCCAGAACTGGTTGAATTTCTTATGTCAACCTTGGTTAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCGCTAAGAGTTGATGCACTTGCTAGTGCCGGATTTAAGATTTCACGCTCAAAGCTAGTTGAGATGATAAGCAATGGTGATGTGCGTGTCAACTGGATCCCTGTTACTACCAAAGGAAACACACTGAAGAGTGGAGATATTGTATCAGTCAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCTACAAAGAAAGGAAAATTTGCAGTGGAGCTCATTCGGTATTTGTAG 915 0.4033 MSSLTLEMYIPRVRGCVGSSTSTRDKTNLKYITSGVSQAVQALKGEVDVLIKGVGERNVAKEVKHILEMARRASSKRETLHTDFLTPPVLKESMQILEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDVISALSIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVEMISNGDVRVNWIPVTTKGNTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01026 304 SUPERFAMILY Alpha-L RNA-binding motif 88 292 - -
Vian11g01026 304 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 60 269 - -
Vian11g01026 304 Pfam S4 domain 233 275 IPR002942 GO:0003723
Vian11g01026 304 CDD S4 230 284 - -
Vian11g01026 304 Gene3D - 223 280 IPR036986 GO:0003723
Vian11g01026 304 SMART s4_6 229 289 IPR002942 GO:0003723
Vian11g01026 304 ProSiteProfiles S4 RNA-binding domain profile. 229 289 - -
Vian11g01026 304 Gene3D - 56 122 - -
Vian11g01026 304 NCBIfam photosystem II S4 domain protein 58 302 IPR017506 -
Vian11g01026 304 Gene3D - 130 212 IPR012677 -
Vian11g01026 304 Pfam Putative RNA-binding domain in YlmH 134 209 IPR040591 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01026 - - gmx:100793767 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01026 11 13790697 13793819 Vian11g01026 11 13790697 13793819 ECH