Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00997 ATGGGAGACCGTTGTAGACATTTTTCCATTGAGGAATTACCATCACATTTGGTTTTAGAAATTCTGTGCTCGGGTAGGCTCAGCGCAATGGACCTTGTTTGCTTAGAATTGACTTCCAAAACTTTTGGTGGTAGCCATGGCCTGTACCCTTTTTTCAAGTTTAAGTCCTTGATTGACTTTGCTGCATTTCAATTGTGTGCTTCCCATGTTACCTATGCTAGGATGGGTTTGATTTCTCAGAGGGAGTTGTATGATAGATGTGGAGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTCAGATGGTCGAGACATCATCAGGCAATATGCAAATAACAACGGGAAAGTATCACACCTTGTTGATCAGCAATTCTTCTGTCTATTCCTGTGGTTCTGGTTTATGCGGAGTACTCGGTCAAGGTCCTGAAACAACACAGTGTGTAGCCTTTACCCGGATTGATTTCCCACCTTTGGCACGTGTGGCTCACGTTTCAGCGTCTTTTAATCATGCAGCTTTTGTCTTGCAATCTGGAGAGGTATTCACATGCGGAGATAATTCATCTTCTTGCTGTGGGCACAGAGATACTAGCCGACCAATCTTCAGGCCACGACTTGTTGAATCCCTTAAGGGGATTCCTTGCAAACAGGTTGCGGCGGGGCTTAACTTCACAGTCTTCCTCACCAGACAAGGTCATATTTATACATGTGGAACCAACACACATGGCCAACTTGGTCATGGTGACACTCAGGACAGGCCAACCCCCAAAATGATTGAAGTCCATGGATCTGTTGTTCAGATTGCTGCAGGACCAAGCTATATCTTATCCGTAACAGAAAATGGAACATTATACTCCTTTGGGTCAGGTGCAAATTTCTGTCTTGGCCATGGTGAGCAACACAATGAGTTTCAGCCACGTGCTGTACAGAAATTCAGACGGAAAGGTATTCATATTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCCCTTGACTCAAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGTGATGAGATTGAGAAGACAACTCCAGAGATGTTGACTAGTCTTAAGAATCAACTGGCTGTTCAGGTCTGTGCAAGGAAGAGGAAAACATTTGTGCTAGTTGATTCTGGTTCAGTCTATGGCTTTGGCTCCATGGGATTTGGCAGCCTCGGATTCCTGGATAGAAGGGTATTAGATAAAGTATTGAAACCTCGAATCTTAGATACCTTGAAATCTCACCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTTGTGATCACTAGCAGGGGAAAGATATTTGGCTTTGGAGATAATGAAAGAGCACAACTTGGTCACGACACATTAAGAAGCTGCCTTGAGCCAACTCAAATTTTCAATAGAGACACATCTGAAGATGTAGAAAGCATGTGA 1461 0.4408 MGDRCRHFSIEELPSHLVLEILCSGRLSAMDLVCLELTSKTFGGSHGLYPFFKFKSLIDFAAFQLCASHVTYARMGLISQRELYDRCGGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTLLISNSSVYSCGSGLCGVLGQGPETTQCVAFTRIDFPPLARVAHVSASFNHAAFVLQSGEVFTCGDNSSSCCGHRDTSRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHIYTCGTNTHGQLGHGDTQDRPTPKMIEVHGSVVQIAAGPSYILSVTENGTLYSFGSGANFCLGHGEQHNEFQPRAVQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEMLTSLKNQLAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVLDKVLKPRILDTLKSHHVSQISTGLYHTVVITSRGKIFGFGDNERAQLGHDTLRSCLEPTQIFNRDTSEDVESM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 486 IPR000408 -
Vian11g00997 486 Gene3D - 87 266 IPR009091 -
Vian11g00997 486 Gene3D - 267 485 IPR009091 -
Vian11g00997 486 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 165 475 - -
Vian11g00997 486 Pfam Regulator of chromosome condensation (RCC1) repeat 182 232 IPR000408 -
Vian11g00997 486 Pfam Regulator of chromosome condensation (RCC1) repeat 285 336 IPR000408 -
Vian11g00997 486 Pfam Regulator of chromosome condensation (RCC1) repeat 236 276 IPR000408 -
Vian11g00997 486 Pfam Regulator of chromosome condensation (RCC1) repeat 339 380 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 288 302 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 272 288 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 442 463 IPR000408 -
Vian11g00997 486 PRINTS Chromosome condensation regulator RCC1 signature 381 399 IPR000408 -
Vian11g00997 486 SUPERFAMILY RCC1/BLIP-II 125 476 IPR009091 -
Vian11g00997 486 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 433 443 IPR000408 -
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 235 IPR000408 -
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 285 IPR000408 -
Vian11g00997 486 Pfam Regulator of chromosome condensation (RCC1) repeat 430 458 - -
Vian11g00997 486 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 326 336 IPR000408 -
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 339 IPR000408 -
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 446 IPR000408 -
Vian11g00997 486 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 391 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00997 Vian-Chr11 13005866 13015176 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00997 - - gmx:100782653 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00997 11 13005866 13015176 Vian11g00997 11 13005866 13015176 ECH