Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00990 ATGAGCAAAGCCTTGGGAGAAGAAGAAGACGAAGAAGAACAAGAACGAGACAGAGACCAAGACCAAGACCAAGACTGTTTCTACGACTCAAACGACCGTTTACTCTCTCTCTCCTCCTCCTGCTCATGCTCCAATTCCAACTCCGACAACGACGAAACCGAGAACGAAACCCAACCCCATCGAAACGACACACTCCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCACCTCTGTCTCCGAGCGCCGCACGCGCCTCCTACTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTCCCCCACGCGATCGCGTTTCCCCAATCCGATCCAAATCCGACGCCACGACCACAAACACGACTGCCGCCGGCGCCGCCACATCATCCTCCGCCGGCGCCATCAATCCTAGGCCCCCGAACCCCAAACCTCCTTCCGAGGAGCTCTGCACGATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACGGGGAGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCTCCCATCGTTCAGGAGTTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATGCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTCGCCGGGTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGACGCGGCGTTTCATGGTCCGGAGAGTGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTAGCAAGTGCTGGTGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTCGATAGGGAGAAGGGGGAAGATGGGGGGAGTGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCGACGGCTGCGGCAATGCTGTCTCCGCTCAGGGATGTGGAGAGGAAGAGGAAGGGGAGGTCCAGCGTGAGTAGGAAGTCCTTGAGCCTCGACCAGTTTGTCGTGCCGCAGACCGTGTTTGCACTCACTGACAAACCAGTTTGCTCCTTTCAGGGACATCTACATGATGTTCTTGACCTCTCATGGTCTAAGTCTCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGCCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCACTTATATAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTCGTTGATGGTGTAGATCTGGTCCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCTCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCGAACAGAAGCAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAGCAACCCGAGCTTGATAACAATGCTGATGATGTCGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGATCTGCATCTGGTTACCACAACAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATCAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2277 0.5108 MSKALGEEEDEEEQERDRDQDQDQDCFYDSNDRLLSLSSSCSCSNSNSDNDETENETQPHRNDTLPNFPLTNNYDIWISQPTSVSERRTRLLLSLGLSSLTRQNPHPPPRDRVSPIRSKSDATTTNTTAAGAATSSSAGAINPRPPNPKPPSEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNASGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPESVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGSVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADDVASANHPPTPVEENFVTEGSRSASGYHNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00990 758 SMART WD40_4 295 334 IPR001680 GO:0005515
Vian11g00990 758 SMART WD40_4 460 498 IPR001680 GO:0005515
Vian11g00990 758 SMART WD40_4 505 550 IPR001680 GO:0005515
Vian11g00990 758 SMART WD40_4 551 592 IPR001680 GO:0005515
Vian11g00990 758 SMART WD40_4 412 457 IPR001680 GO:0005515
Vian11g00990 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Vian11g00990 758 Pfam WD domain, G-beta repeat 555 592 IPR001680 GO:0005515
Vian11g00990 758 Pfam WD domain, G-beta repeat 414 457 IPR001680 GO:0005515
Vian11g00990 758 Pfam WD domain, G-beta repeat 301 333 IPR001680 GO:0005515
Vian11g00990 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 335 - -
Vian11g00990 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 458 - -
Vian11g00990 758 MobiDBLite consensus disorder prediction 29 52 - -
Vian11g00990 758 Gene3D - 245 370 IPR015943 GO:0005515
Vian11g00990 758 MobiDBLite consensus disorder prediction 1 73 - -
Vian11g00990 758 Gene3D - 407 615 IPR015943 GO:0005515
Vian11g00990 758 PANTHER WD REPEAT DOMAIN 44 435 755 IPR040324 -
Vian11g00990 758 MobiDBLite consensus disorder prediction 118 142 - -
Vian11g00990 758 MobiDBLite consensus disorder prediction 244 265 - -
Vian11g00990 758 FunFam Transducin/WD40 repeat-like superfamily protein 260 367 - -
Vian11g00990 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 458 IPR001680 GO:0005515
Vian11g00990 758 SUPERFAMILY WD40 repeat-like 300 595 IPR036322 GO:0005515
Vian11g00990 758 MobiDBLite consensus disorder prediction 99 154 - -
Vian11g00990 758 MobiDBLite consensus disorder prediction 241 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00990 Vian-Chr11 12848826 12853976 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00990 K20241 - gmx:100815065 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00990 11 12848826 12853976 Vian11g00990 11 12848826 12853976 ECH