Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00976 ATGGCCAACTTCCTCGCTCAGTTCCAGACAATAAAAAACGCCTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGACTTGTGGCCGACTGTCAAACCTGCTTTTGAGGGGCGTTTGCCGTTCAAACGGGCGACTTTGAATAACAAGACGCGGAACCCTGTCTTTGTTGACACATTGCCAGCCGAGTTCATATTAACTACTGATTCAAGACTACGCAGCCGGTTCCCTCAGGAGCAGTTTTTATTTTGGTTTCGAGAGCCTTATGCAACAGTTGTACTTGTCACCTGTGAGGATCTAGATGAGTTCAAAACCATCCTTAAACCACGTTTGAAATTAATTGTCCAAAATGAAGAAAGGGAGTGGTTCGTTGTATTTGTATCAAAAGCTCATCCAGCTAATGATCAGGCAAACAAAATGGCGAAGAAAGTATATGCTAAACTTGAAGTTGAGTTTAATACCAAAAAAAGAGAAAGATGTTGCAAATATGACATGCATTTTCCTGAAGCAAACTTTTGGGAGGATCTAGAATCAAAGATAATGGAATGCATCAGAAATACCCTGGATAGACGTGTACAATTTTATGAGGATGAGATAAGAAAGCTCAGTGAACAGCGCCTCATGCCAGTCTGGAACTTCTGCAACTTTTTTATTCTAAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCTCACCTTCATGATGATGCGTTACGAGAATATGATGAGCTGGAACTCTGTTATCTTGAAACAGTTAACATGACTGGAAAGCAGAGAGATTTTGGAGGGGCTGATCATGGTGATGATCAGGCAACATTGCTTAATCCAATAAATAAACCATTGACACAGATGGTTCAAGAGGACACGTTTAGGGAGTTTGAATTCAGACAGTATCTATTTGCATGTCAATCAAAGCTCTTATTCAAGCTAAATCGTCCCATTGAGGCTGCAACACGAGGCTATTCATTCATAATAAGCTTTTCTAAGTCCTTGTCCTTGCATGAGCGGATTCTGCCGTTTTGTATGCGTGAAGTCTGGGTAGCAACTGCTTGCATGTCTTTAATTAAAGCAACCACTTCAAATTATACTGATGGAGATGTGGCGCCTGACATAGAGAAGGAGTTTTTTCGTCTTCTGGGTGACCTATACTCTCTAGCTAGAGTTAAGTTCTTGAGGCTTGCCTATTTAATTGGGTATGGAACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCATGGCCAAAGCCAGCTGTTTGGCCTTCAGTTCCTGCTGACTCATCCGTAGAGGTGCTTGAGAAAGAAAAGCTTATTCTCCAAACAACTTCCAGAACCAAGCACTTTGGTATCCAGAGGAAACCTCTGCCCCTTGAACCTACTGTTCTTCTGCGAGAGGCCAACAGGCGCAGGGCTTCACTTTCGGCTGGAAATGTGTCTGAAATGTTTGATAGTCGTCAGGGTCCAATGGATGGATCAGGTTTCGATGCATCCACAAGAATGTCACCACACAAAGCACCTCCAAATTCCATGACACGTACAAATTCTTCACCAGGAAACTTCGATAGTTCAATTGACCGACCAATGAGGCTTGCTGAGATTTTCATTGCAGCTGAGCATGCTTTGAAGCAAACCATTTCTAGTCCAGAACTGTGGAGATCGTTATCATCATCTGAGGAATTTGAGAAAAAATATTTAGAGCTAACTAAAGGTGCTGCTGACAATTACCATCGTTCCTGGTGGAAAAGACATGGTGTTGTCCTTGATGGTGAGATAGCAGCTGTCGCTTTTAAGCATGGGAATTTTGATCGAGCTGCAGAGTCATATGAGAAGGTTTGTGCACTGTATGCTGGTGAAGGATGGCAGGATCTGTTGGCTGAGGTTCTTCCCAATTTAGCCGAGTGTCAGAAGATGATCAATGATCAAGCTGGCTACTTACTATCTTGTGTGAGGTTACTCTCTCTTGATGAAGGATTATTTTTGACCAAGGAGCGCCAAGCCTTTCAATCAGAAGTCATTCGTCTTGCTCATAGTGAAATGAAGGACCCTATACATCTTGATGTATCGTCATTAATAACATTTTCTGGAAACCCTGGGCCTCCTTTGGAGTTATGTGATAGAGATCCCGGTATCCTTTCTGTAACTGTATGGAGTGGGTTTCCAGACGATATAACTCTTAATTCAATCACTCTTACATTAAATGCAACATATAATACTGATGACGGTGTAAAGGCTTTGAAAAGTTCTACACCTATTGTGCTACACGCTGGTCGGAATACTATTACCTTAGATCTACCTCCTCAGAAACCAGGATCTTATGTTCTTGGAGTTCTCACTGGACAGATTGGAGATTTAAGGTTTAGATCTCACAGTTTTTCAAAAGTTGGTCCTGCAGATAGTGATGATTTTATGAGTTATGAAAAGCCAGCTAAACCCATTTTGAAGGTTTTCAAACCTAGAGCTCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTGATAAATGAACACCAATGGGTTGGAATTTTAGTTCGACCTGTTAAATACTCCCTCAAAGCTGCTGTCTTGCATATCGATACTGGTCCAGGGTTGGAGATTAAAGAGTCACATGTAATTGAGATGGAAAGCTATGCTGGTGTATCACAGAATAAAGATGACCAGCTGCAAAATGACTGTGCTCAATTAAATTCTGATAAAAATTTTGAACGCTTGACACTTAATGATGGCAAAATAGAATTTCCGAATTGGGCAAGTGACAATCCTTCTATTCTTTGGGTTCTGGTACGTGCCATCAGTGACACACTTAGCAGAGGATCTTCTTCAGCCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTTCATTTTACAGATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGACGGCACCCTGCTTCTGCAGATAATACTTCACTCAGAAGTAAAGGCTACACTAACTGTATATGATGCTTGGCTTGATCTTCAAGATGGATTTGTTCATACTGGACAAACTGAGGGTAGAGCTAATTCAAGTTTCTTCCCGCTAGTCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGTATCTGCCTAGACAAAACAAATGCAGAAGAAGCCAGGAAGCAACCAGAAAGCATATTAAATATCAAATACGGAATTTCTGGTAGTAGAACAATTGGGGCTCACCCTCCTGTCATGAATGAATCTACTGGAGTTGATGATGCCAGACAAGAGTTAATATTCAGAAGTGCAATTACTTTGCAAAGGCCTGTACTTGATCCTTGCCTAGCTGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTGAGAGTTGGACAACTAGTTAAGATGCAATGGAGAGTGGAAAGGTTAAAGGATTTGGATGACGAAGGAGTTTCTAAACATAATGATGAGTTGCTATATGAAGTAAAGGCAAATTCTGGAAATTGGATGATAGCCGGGAGGAAAAGAGGATACGCATCTCTGTCCACAGAACAAGGCGCAAGAATTATTATCTCAGTATTATGCATGCCACTGGTGGCTGGTTATGTTCGCCCTCCCCTACTAGGGTTGCCAGATGTTGACGAGGCAAATATAAGCTGCAAGCCTGCTGGACCACATCTGGTTTGTGTTTTGCCTCCGCCTCTCAGTTCTTCATTCTGCATTCCAGTTAATTCATGA 3765 0.4178 MANFLAQFQTIKNASDRLVISVEDVSDLWPTVKPAFEGRLPFKRATLNNKTRNPVFVDTLPAEFILTTDSRLRSRFPQEQFLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNEEREWFVVFVSKAHPANDQANKMAKKVYAKLEVEFNTKKRERCCKYDMHFPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHDDALREYDELELCYLETVNMTGKQRDFGGADHGDDQATLLNPINKPLTQMVQEDTFREFEFRQYLFACQSKLLFKLNRPIEAATRGYSFIISFSKSLSLHERILPFCMREVWVATACMSLIKATTSNYTDGDVAPDIEKEFFRLLGDLYSLARVKFLRLAYLIGYGTDIERSPVNSASLSLLPWPKPAVWPSVPADSSVEVLEKEKLILQTTSRTKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVSEMFDSRQGPMDGSGFDASTRMSPHKAPPNSMTRTNSSPGNFDSSIDRPMRLAEIFIAAEHALKQTISSPELWRSLSSSEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVAFKHGNFDRAAESYEKVCALYAGEGWQDLLAEVLPNLAECQKMINDQAGYLLSCVRLLSLDEGLFLTKERQAFQSEVIRLAHSEMKDPIHLDVSSLITFSGNPGPPLELCDRDPGILSVTVWSGFPDDITLNSITLTLNATYNTDDGVKALKSSTPIVLHAGRNTITLDLPPQKPGSYVLGVLTGQIGDLRFRSHSFSKVGPADSDDFMSYEKPAKPILKVFKPRALVDLDAAVSSALLINEHQWVGILVRPVKYSLKAAVLHIDTGPGLEIKESHVIEMESYAGVSQNKDDQLQNDCAQLNSDKNFERLTLNDGKIEFPNWASDNPSILWVLVRAISDTLSRGSSSATTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTDPFYVRTRVTDKCNDGTLLLQIILHSEVKATLTVYDAWLDLQDGFVHTGQTEGRANSSFFPLVISPTSKAGILFSICLDKTNAEEARKQPESILNIKYGISGSRTIGAHPPVMNESTGVDDARQELIFRSAITLQRPVLDPCLAVGFLPLPSDGLRVGQLVKMQWRVERLKDLDDEGVSKHNDELLYEVKANSGNWMIAGRKRGYASLSTEQGARIIISVLCMPLVAGYVRPPLLGLPDVDEANISCKPAGPHLVCVLPPPLSSSFCIPVNS 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00976 1254 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 8 1251 IPR045126 GO:0048193|GO:1990071
Vian11g00976 1254 MobiDBLite consensus disorder prediction 505 524 - -
Vian11g00976 1254 Coils Coil 185 205 - -
Vian11g00976 1254 MobiDBLite consensus disorder prediction 484 524 - -
Vian11g00976 1254 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1136 1213 IPR022233 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00976 K20307 - gmx:100787264 2336.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00976 11 12468412 12489580 Vian11g00976 11 12468412 12489580 ECH