Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00943 ATGCCTGAGGCTCCCAGAGACTCCCACACACAGTATGACCTTGCAGAAAAGAACAGGGAGATTCTGAACTTCATAGAGGATGTCACTGCTAACGCAGATGAAGTTCAGAAGAGGGTTCTTTCTGAAATTCTGTCCCGCAATGCAAACGTTGAGTACCTGCGACGACACGGTTTTAATGGCCAAACCGACCGCGATACCTTCAAGAACCTTCTCCCTGTCATTAACTACGAGGATGTCCAACCCGACATTAACCGCATCGCCAATGGTGACACCTCTCCAATTCTCACCTCCAAACCCATCACGGAGTTTCTCACCAGCTCTGGGACATCAGGGGGTGAGAGAAAGTTGATGCCAACAATTGAGGAGGAGCTAGGGAGGAGGTGTATGTTGTACAGTCTGTTGATGCCAATAATGAGCCAGTTTGTTCCAGACCTAGAAAAAGGAAAAGGAATGTATCTGATGTTCATAAAATGTGAGTCCAAAACACCTGGAGGAATAGTGGCTCGTCCAGTTCTCACAAGCTACTACAAGAGCCCCTACTTTAGGGATAGACCCTACGACCCTTACACAAACTACACAAGCCCAAATGAGACCGTCCTCTGTCCTGATTCCTACCAAAGCATGTACTCCCAACTCCTTTGTGGCCTTTGCCAAAACAAAGAGGTTTTAAGAGTGGGGGCCATCTTTGCCTCTGGTTTCATTCGTGCCATTCGCTTCCTGGAGAAACACTGGACCCTCCTTTGCAATGATATCCGAACAGGAACTGTCAACCCTCTCATCACTGACACGTCAGTCAGAGAGGCTGTGATGAGGATCCTGCAGCCTGATCCCAAGCTTGCGGATATGATTCACAGGGAGTGTAGCAAGGGGTGTTGGCAGGGGATTATTACCAGGCTTTGGCCCAATACAAAGTATGTGGATGTTATTGTGACGGGGACTATGGCACAATACATTCCCACTTTGGATTACTACAGCAATGGCCTTCCACTTGTCTGCACCATGTACGCTTCTAGTGAGTGTTACTTTGGGGTTAACCTCAACCCTCTTTGCAAACCTAGCCAAGTCTCTTACACCCTCATCCCCACCATGTGTTACTACGAATTCCTACCCGTCAACCGAACCATTGACCTCACTCTACCTTCTTCTAGACCATCACCAACATCTCTCAATCACGCACAATTGCTCGAGCTTGCTGATGTCAAACTCGGTCAAGAATATGAGCTCGTTGTCACAACTCATGCTGGGCTTTATCGGTATAGAGTGGGAGATATACTAAGGGTGACAGGATTCAAGAACAAGGCCCCACAGTTTAGCTTTGTGTGCAGAAAGAACGTTGCCCTGAGCATAGATTCTGACAAGACTGATGAGGTTGAGCTGCAAAACGCAATGAAGAATGCAGTGACACACCTGGTTCCATTTGATGCACACGTGAGTGAGTACACCAGCTACGCAGACACCAGCACAATCCCGGGACACTATGTGTTGTATTGGGAGCTAAGCCTGAACGGGTCAACCCCTATTCCACCCTGCGTCTATGAAGATTGTTGCCTAACAATTGAGGAGTCACTGAACAGCGTGTATCGCCAGGGTCGTGTCTCGGACAAATCAATAGGACCCCTTGAGATCAAGATTGTGGAACAGGGCACCTTTGACAAACTGATGGACTATGCCATTAGCTTAGGTGCGTCAATTAACCAGTACAAGGCACCAAGGTGTGTCAAGTTTGCTCCTATGGTGGAATTGTTGAACTCAAGGGTAACATCCAACTACTTTAGTCCCAAGTGTCCTAAGTGGGTTCCGGGACACAAACAGTGGATTCATTGTAATTGA 1830 0.4776 MPEAPRDSHTQYDLAEKNREILNFIEDVTANADEVQKRVLSEILSRNANVEYLRRHGFNGQTDRDTFKNLLPVINYEDVQPDINRIANGDTSPILTSKPITEFLTSSGTSGGERKLMPTIEEELGRRCMLYSLLMPIMSQFVPDLEKGKGMYLMFIKCESKTPGGIVARPVLTSYYKSPYFRDRPYDPYTNYTSPNETVLCPDSYQSMYSQLLCGLCQNKEVLRVGAIFASGFIRAIRFLEKHWTLLCNDIRTGTVNPLITDTSVREAVMRILQPDPKLADMIHRECSKGCWQGIITRLWPNTKYVDVIVTGTMAQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSQVSYTLIPTMCYYEFLPVNRTIDLTLPSSRPSPTSLNHAQLLELADVKLGQEYELVVTTHAGLYRYRVGDILRVTGFKNKAPQFSFVCRKNVALSIDSDKTDEVELQNAMKNAVTHLVPFDAHVSEYTSYADTSTIPGHYVLYWELSLNGSTPIPPCVYEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKLMDYAISLGASINQYKAPRCVKFAPMVELLNSRVTSNYFSPKCPKWVPGHKQWIHCN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00943 609 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 18 595 IPR004993 -
Vian11g00943 609 Pfam GH3 auxin-responsive promoter 25 574 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00943 Vian-Chr11 11525097 11527463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00943 13 592 EF-hand Containing Proteins AT1G23160 49.915 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00943 K14487 - gmx:100797120 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00943 11 11525097 11527463 Vian11g00943 11 11525097 11527463 ECH