Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00898 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCGGAATGTACCGATGTTCCTATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGAAAGTGGCATGCTGCATTTACTCCTGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGTGCCACGGGGAACTCTGGCTGGCTGGAAAACATAAGCATGAGATTCCATTAACTTGGCTGAGATTGAAAATGCAATATGCTACACTTAAAGAAGAATGCCGCCAATTGTTTCCTCTTATTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTCTTCCAATTCAAGATCCATTGGTTCTGAAAGAAACAAATTCAGCCAAGGGATTGGATGTACATCATCAAGATAATAATAATCATTCAAGTAGGATTGCTACAAATAGTTTACAGAAGGTGACAGACAAGATAGTAGTCCAGTGGCTGTTAACTCTTCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACCTGTCAAAATTATGGGATGTACTAGCTGTTTATGCTTGGGTAGATAAAGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCTATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGGCTTGTTGAATCTCAGTTTCTTATTATTTGTGTTCTTGAATTTGTAAAGCGCGGCAATTTTAGATGCACTGAGAGCTCTGTTGGGGTGACATCTCAACTAAATGTGTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAACCATTTAGACAATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCATTGTATCTTTGGGAGATGATGTGGGCCTTGGAATATGATCCTGACTTGTTCTTGATGTATGAAATGCCTGAATCAGCTTCTGAAAAAGCTGTGGGCTCAAAAGGGAAATCAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAATTTTTGAAGAGTGGATCAAAGAATGCTTCTCAAGCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTTTTGAAAGATAAAAGTTCAAAACTACTCCAAGAAGCACGGGGTTTGGATGATGTTGTCAAGATCTTGAACGACATAACTGGGAATCTAGACGCCAAAAAAGCTTGCAATGGGGCTATGAAACTTCATAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG 1341 0.3975 MWRDPGVSADSFYEIRPECTDVPISRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGCHGELWLAGKHKHEIPLTWLRLKMQYATLKEECRQLFPLIGSGRFVTAPVVTEDGLPIQDPLVLKETNSAKGLDVHHQDNNNHSSRIATNSLQKVTDKIVVQWLLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDVLAVYAWVDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLVESQFLIICVLEFVKRGNFRCTESSVGVTSQLNVLASVTQVIDPKLHNHLDNLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPESASEKAVGSKGKSKSIRQCGKYEREFLKSGSKNASQAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDITGNLDAKKACNGAMKLHKKYLKKAKKP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00898 446 Gene3D - 268 445 - -
Vian11g00898 446 FunFam TBC1 domain family member 15-like 149 247 - -
Vian11g00898 446 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 270 439 IPR035969 -
Vian11g00898 446 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 155 292 IPR035969 -
Vian11g00898 446 Pfam Rab-GTPase-TBC domain 152 330 IPR000195 -
Vian11g00898 446 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 56 417 - -
Vian11g00898 446 ProSiteProfiles TBC/rab GAP domain profile. 155 332 IPR000195 -
Vian11g00898 446 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 140 248 - -
Vian11g00898 446 SMART tbc_4 125 355 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00898 Vian-Chr11 10274975 10282815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00898 - - gmx:100805808 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00898 11 10274975 10282815 Vian11g00898 11 10274975 10282815 ECH