Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00829 ATGGGTGCCGACGAAGACTATGACTACTTGTTCAAGCTCGTCCTCATCGGTGATTCTGCCGTTGGAAAGTCCAACCTCTTATCTCGATTCACGCGAAACGAGTTCAGCTTGGAGACCAAATCCACCATCGGCGTCGAATTCGCCACCCGCAGCGTCCCCGTCGATAGCAAACTCGTCAAGGCTCAAATCTGGGACACCGCCGGCCAAGAAAGGACACTGATCGAAGAACTGAGGCCTGATTTGACTGTGTTCTGTAATATATGGTTGCTGTTGGTTAGGGAAGGTTTTCAAGACATGAAAAAATATCGTGCTATTACAAGTGCATATTACCGAGGAGCAGTTGGTGCTTTGGTTGTGTACGATGTAACTCGACACGTGACGTTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGGGATCACACAGAAGCATATGTTGTGGTGATGCTGGTGGGAAACAAGGCAGATCTTCGACATTTGCGTGCAGTGTCAACTGATGAAGCCAAAGAATATGCAGAAAAAGAGAAGATATTCTTCATGGAAACCTCTGCCCTTGAGTCCTTGAATGTGGACAGTGCTTTTACAGAAGTGCTGACTCAGATATACAATGTTGTGAGTAGGAAAACACTTGAGACAGTGGATGAATCTCATGCAACATCCTTGCCCAAAGGGGAAACCATTGTTCTTGGAACCAAAGAGGATGTTTCAGCTGTTAAAAAGAGTGGATGCTGTTCCACATAG 741 0.4615 MGADEDYDYLFKLVLIGDSAVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPVDSKLVKAQIWDTAGQERTLIEELRPDLTVFCNIWLLLVREGFQDMKKYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGNKADLRHLRAVSTDEAKEYAEKEKIFFMETSALESLNVDSAFTEVLTQIYNVVSRKTLETVDESHATSLPKGETIVLGTKEDVSAVKKSGCCST 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00829 246 PRINTS Transforming protein P21 ras signature 34 50 - -
Vian11g00829 246 PRINTS Transforming protein P21 ras signature 52 74 - -
Vian11g00829 246 PRINTS Transforming protein P21 ras signature 11 32 - -
Vian11g00829 246 PRINTS Transforming protein P21 ras signature 179 201 - -
Vian11g00829 246 ProSiteProfiles small GTPase Rho family profile. 4 202 - -
Vian11g00829 246 PANTHER DRAB11-RELATED 4 225 - -
Vian11g00829 246 NCBIfam small GTP-binding protein domain 101 197 IPR005225 GO:0005525
Vian11g00829 246 NCBIfam small GTP-binding protein domain 9 72 IPR005225 GO:0005525
Vian11g00829 246 ProSiteProfiles small GTPase Rab1 family profile. 6 244 - -
Vian11g00829 246 ProSiteProfiles small GTPase Ras family profile. 5 229 IPR001806 GO:0003924|GO:0005525
Vian11g00829 246 SMART ras_sub_4 8 204 - -
Vian11g00829 246 SMART rho_sub_3 13 204 IPR001806 GO:0003924|GO:0005525
Vian11g00829 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 209 IPR027417 -
Vian11g00829 246 Pfam Ras family 101 202 IPR001806 GO:0003924|GO:0005525
Vian11g00829 246 Pfam Ras family 12 71 IPR001806 GO:0003924|GO:0005525
Vian11g00829 246 CDD Rab11_like 8 202 - -
Vian11g00829 246 SMART rab_sub_5 11 204 - -
Vian11g00829 246 Gene3D - 3 244 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00829 Vian-Chr11 9064090 9065737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00829 K07904 - ming:122065655 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00829 11 9064090 9065737 Vian6g01721 6 34703226 34704138 ECH
Vian11g00829 11 9064090 9065737 Vian11g00829 11 9064090 9065737 ECH